Leta i den här bloggen

måndag 9 mars 2020

COVID-19, nsp4 (2764..3263),

    mat_peptide     2764..3263
                     /product="nsp4"
                     /note="contains transmembrane domain 2 (TM2); produced by
                     both pp1a and pp1ab"
 
 
    Protein         <1 ..="">500
                     /product="orf1ab polyprotein"
     mat_peptide     1..500
                     /product="nsp4"
                     /note="contains transmembrane domain 2 (TM2); produced by
                     both pp1a and pp1ab"
     CDS             1..4405
                     /gene="orf1a"
                     /coded_by="MT049951.1:266..13483"
                     /note="pp1a"
ORIGIN      
        1 kivnnwlkql ikvtlvflfv aaifylitpv hvmskhtdfs seiigykaid ggvtrdiast
       61 dtcfankhad fdtwfsqrgg sytndkacpl iaavitrevg fvvpglpgti lrttngdflh
      121 flprvfsavg nicytpskli eytdfatsac vlaaectifk dasgkpvpyc ydtnvlegsv
      181 ayeslrpdtr yvlmdgsiiq fpntylegsv rvvttfdsey crhgtcerse agvcvstsgr
      241 wvlnndyyrs lpgvfcgvda vnlltnmftp liqpigaldi sasivaggiv aivvtclayy
      301 fmrfrrafge yshvvafntl lflmsftvlc ltpvysflpg vysviylylt fyltndvsfl
      361 ahiqwmvmft plvpfwitia yiicistkhf ywffsnylkr rvvfngvsfs tfeeaalctf
      421 llnkemylkl rsdvllpltq ynrylalynk ykyfsgamdt tsyreaacch lakalndfsn
      481 sgsdvlyqpp qtsitsavlq
  
// 
 
 
Vertailua varten pätkänä  kiinalaisten ORF1a ja alempana  Suomen  peptidistä.
Samanlaiset. 
 
 2764 kivnnwl kqlikvtlvf lfvaaifyli tpvhvmskht dfsseiigyk aidggvtrdi
     2821 astdtcfank hadfdtwfsq rggsytndka cpliaavitr evgfvvpglp gtilrttngd
     2881 flhflprvfs avgnicytps klieytdfat sacvlaaect ifkdasgkpv pycydtnvle
     2941 gsvayeslrp dtryvlmdgs iiqfpntyle gsvrvvttfd seycrhgtce rseagvcvst
     3001 sgrwvlnndy yrslpgvfcg vdavnlltnm ftpliqpiga ldisasivag givaivvtcl
     3061 ayyfmrfrra fgeyshvvaf ntllflmsft vlcltpvysf lpgvysviyl yltfyltndv
     3121 sflahiqwmv mftplvpfwi tiayiicist khfywffsny lkrrvvfngv sfstfeeaal
     3181 ctfllnkemy lklrsdvllp ltqynrylal ynkykyfsga mdttsyreaa cchlakalnd
     3241 fsnsgsdvly qppqtsitsa vlq
 
 2764 kivnnwl kqlikvtlvf lfvaaifyli tpvhvmskht dfsseiigyk aidggvtrdi
     2821 astdtcfank hadfdtwfsq rggsytndka cpliaavitr evgfvvpglp gtilrttngd
     2881 flhflprvfs avgnicytps klieytdfat sacvlaaect ifkdasgkpv pycydtnvle
     2941 gsvayeslrp dtryvlmdgs iiqfpntyle gsvrvvttfd seycrhgtce rseagvcvst
     3001 sgrwvlnndy yrslpgvfcg vdavnlltnm ftpliqpiga ldisasivag givaivvtcl
   3061 ayyfmrfrra fgeyshvvaf ntllflmsft vlcltpvysf lpgvysviyl yltfyltndv
     3121 sflahiqwmv mftplvpfwi tiayiicist khfywffsny lkrrvvfngv sfstfeeaal
     3181 ctfllnkemy lklrsdvllp ltqynrylal ynkykyfsga mdttsyreaa cchlakalnd
     3241 fsnsgsdvly qppqtsitsa vlq

Inga kommentarer:

Skicka en kommentar