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torsdag 14 maj 2026

Andes viruksen käyttämäksi solureseptoriksi tunnistettu protocadheriini-1

 Jangra, R.K., Herbert, A.S., Li, R. et al. Protocadherin-1 is essential for cell entry by New World hantaviruses. Nature 563, 559–563 (2018). https://doi.org/10.1038/s41586-018-0702-1

Abstract

The zoonotic transmission of hantaviruses from their rodent hosts to humans in North and South America is associated with a severe and frequently fatal respiratory disease, hantavirus pulmonary syndrome (HPS)1,2. No specific antiviral treatments for HPS are available, and no molecular determinants of in vivo susceptibility to hantavirus infection and HPS are known. Here we identify the human asthma-associated gene protocadherin-1 (PCDH1)3,4,5,6 as an essential determinant of entry and infection in pulmonary endothelial cells by two hantaviruses that cause HPS, Andes virus (ANDV) and Sin Nombre virus (SNV). In vitro, we show that the surface glycoproteins of ANDV and SNV directly recognize the outermost extracellular repeat domain of PCDH1—a member of the cadherin superfamily7,8—to exploit PCDH1 for entry. In vivo, genetic ablation of PCDH1 renders Syrian golden hamsters highly resistant to a usually lethal ANDV challenge. Targeting PCDH1 could provide strategies to reduce infection and disease caused by New World hantaviruses.

...https://www.nature.com/articles/s41586-018-0702-1


ANDV uusinta tietoa vuodelta 2025

  Coelho R, Kehl S, Periolo N, Biondo E, Alonso D, Perez C, et al. (2025) Virological characterization of a new isolated strain of Andes virus involved in the recent person-to-person transmission outbreak reported in Argentina. PLoS Negl Trop Dis 19(6): e0013205. https://doi.org/10.1371/journal.pntd.0013205

https://www.cell.com/cms/10.1016/j.cell.2026.01.030/asset/19303c45-3f83-4144-ba0a-415a9aa8db40/main.assets/fx1.jpg

Introduction

Andes virus (ANDV), a rodent-borne New World hantavirus, causes hantavirus cardiopulmonary syndrome (HCPS) in humans, with case fatality rates reaching 40%. Hantaviruses are classified into Old World hantaviruses (OWHs), which cause hemorrhagic fever with renal syndrome (HFRS), and New World hantaviruses (NWHs), which cause the more frequently fatal HCPS. Human infection occurs primarily through the inhalation of aerosolized rodent saliva and excreta, although human-to-human transmission through close contact has been documented for ANDV.,, Despite the public health threat posed by ANDV, there are no approved vaccines or therapeutics.
Like other viruses of the family Hantaviridae, ANDV is an enveloped virus enclosing a tri-segmented, negative-strand RNA genome., The medium (M) segment encodes a glycoprotein precursor (GPC), which is co-translationally cleaved by signal peptidase in the endoplasmic reticulum (ER) into two glycoproteins, Gn and Gc. These proteins form a metastable heterodimer at neutral pH, which then oligomerizes into tetramers that form a curved lattice structure critical for virion assembly and budding., Hantavirus assembly predominantly occurs at the Golgi apparatus or plasma membrane.,, Following egress, ANDV binds to its primary receptor, protocadherin-1 (PCDH1), for entry. Following endocytosis, the acidic endosomal environment triggers conformational changes in the glycoprotein complex. This leads to the release of the class II viral fusion protein, Gc, from the Gn–Gc complex, allowing Gc to mediate the fusion of the viral and endosomal membranes as it transitions from the metastable prefusion conformation to the stable postfusion conformation.,
Gn and Gc are the only surface-exposed glycoproteins on hantavirus virions and serve as the primary targets of the neutralizing antibody response., Antibodies that cross-neutralize multiple hantaviruses have been reported,, and survivors of hantavirus infection often retain long-lasting neutralizing antibody titers. Moreover, neutralizing antibody titers are a strong correlate of protection for both HFRS and HCPS patients.,, These observations have spurred extensive vaccine development efforts aimed at eliciting robust, long-lasting, and broadly neutralizing immune responses directed toward the Gn and Gc antigens., Notably, recombinant vesicular stomatitis viruses (rVSVs) expressing ANDV or Sin Nombre virus (SNV) glycoproteins have shown efficacy in animal models. Additionally, an ANDV M-segment-based DNA vaccine has demonstrated protective effects. These approaches induced cross-neutralizing antibodies and protected hamsters and rhesus macaques against lethal challenge with ANDV and SNV, respectively.
In parallel, high-throughput isolation and characterization of monoclonal antibodies have advanced our understanding of the humoral immune response to hantavirus infection.,, Structural studies using X-ray crystallography and cryo-electron tomography (cryo-ET) have provided insights into the molecular mechanisms of antibody-mediated neutralization.,,,, However, high-resolution structural information of antibodies in complex with Gn–Gc in their tetrameric or lattice-associated forms remains scarce.
Structural studies of authentic ANDV virions have been constrained by biosafety level 3 requirements. Nevertheless, significant insights have been obtained from studies of apathogenic hantaviruses, like Tula virus (TULV). In addition, investigations of OWHs, including Puumala virus (PUUV) and Hantaan virus (HTNV), have elucidated the organization of the glycoprotein lattices and the conformational arrangement of Gn and Gc.,,,,, A model of the ANDV glycoprotein tetramer and lattice was subsequently generated by docking crystal structures of the ANDV Gn base tetramer and a single-chain construct of the Gn head and Gc ectodomain heterodimer in its prefusion conformation into the cryo-ET map of TULV. In this model, Gn resides centrally, mediating tetramerization, whereas Gc is positioned peripherally along the edge of each tetramer, mediating tetramer-tetramer interactions. However, differences in tetramer architecture between OWHs and NWHs complicate direct extrapolation to ANDV, and the absence of high-resolution structures of the tetramers in their native membrane environment continues to impede a comprehensive molecular understanding of ANDV architecture, function, and antibody-mediated inhibition.
Here, we demonstrate that the addition of an eVLP tag to the ANDV-GPC substantially enhances the production of ANDV-virus-like particles (VLPs). Purification of these VLPs enabled single-particle cryo-electron microscopy (cryo-EM) studies, allowing us to determine the structure of individual ANDV Gn–Gc tetramers to 2.35 Å resolution, as well as dimers of ANDV Gn–Gc tetramers in three related flexing conformations to 3.2, 3.4, and 3.4 Å resolution. Furthermore, we resolved the structure of the antigen-binding fragment (Fab) of ADI-65534, an engineered pan-hantavirus antibody, in complex with ANDV tetramers and dimers of tetramers, unexpectedly demonstrating that the full-length immunoglobulin G (IgG) is unable to cross-link neighboring tetramers. These structures reveal the molecular basis of Gn–Gc tetramer organization, lattice formation, acid-induced membrane fusion, and antibody-mediated neutralization. Additionally, immunogenicity studies of ANDV-VLPs as a self-amplifying replicon RNA (repRNA) vaccine candidate revealed improved binding—but equivalent neutralizing—antibody titers, suggesting a need to further characterize determinants of repRNA-encoded ANDV glycoprotein immunogenicity.

onsdag 13 maj 2026

Orthohantavirus andesense Andes hantaviruksen taustaa aiemmilta vuosilta


Introduction

Hantaviruses (Bunyaviricetes: Elliovirales: Hantaviridae: Mammantavirinae) are enveloped, single stranded, negative sense RNA viruses with three-segmented genome. The genomic segments consist of a small segment (S), a medium segment (M), and a large segment (L), which encode the nucleocapsid (N) protein, a nonstructural protein (NSs) in some species, surface glycoproteins (Gn and Gc), and an RNA-dependent RNA polymerase (RdRp), respectively [1]. Hantaviruses are distributed worldwide and are hosted by various vertebrate animal species. Pathogenic hantaviruses are primarily associated with rodents as natural reservoirs and are classified under the genus Orthohantavirus. These viruses establish seemingly asymptomatic and chronic infections in several rodent species. The risks of viral spillover have increased due to new farming practices, climate change, the expansion of rural human settlements, and disruptions to the zoonotic interface. Additionally, rural tourism has led to travel-related cases [24].

Several species of orthohantaviruses are responsible for Hantavirus Pulmonary Syndrome (HPS) in the Americas and Hemorrhagic Fever with Renal Syndrome (HFRS) in Asia and Europe. HPS, first described in 1993 in the US [5], is caused by at least 24 distinct viruses [6]. In Argentina, most HPS cases are caused by 7 viruses closely related to Andes virus (ANDV), species Orthohantavirus andesense. ANDV was the first hantavirus characterised in Argentina [7]. It was associated with the long-tailed pygmy rice rat Oligoryzomys longicaudatus in the Patagonian Andean region. After human infection, the signs and symptoms of the disease can manifest after a long period of up to 40 days [8,9]. Severe cases had progressive pulmonary edema, hypoxia and hypotension; fatal cases had a severe compromise in hemodynamic function. ANDV-HPS is associated with high case-lethality rates ranging from 21–50% [10,11].

Humans generally become infected through the inhalation of aerosolized rodent excreta. Before 1996, the route of orthohantavirus transmission was considered strictly zoonotic, resulting in “dead-end” human infections [7]. However, in 1996, an ANDV-caused HPS outbreak occurred in the small city of El Bolsón and then expanded to distant cities, such as Bariloche (121 km) and Buenos Aires (1700 km), involving 16 epidemiologically linked cases. This outbreak became a focal point for orthohantavirus research because molecular and epidemiological evidence suggested person-to-person (PTP) transmission [12,13]. A larger PTP transmission outbreak that began in 2018 and involved 34 cases and was curtailed by the implementation of strict quarantine measures. In this outbreak, several individuals were identified as superspreaders, predicting the high transmission potential of this strain [10].

lördag 28 februari 2026

WHO kuvaa Sars-2-cov viruksen varianttien prevalensseja neljältä viime epiviikoilta 23. helmikuuta 2026 näin:

 VOI-variantti:

JN.1 , esiintymä  6,44% , ( lisääntynyt 0,76%).

VUM variantit:

XFG,  Esiintymä 55.36%, ( vähentynyt 3,83%).

NB.1.8.1, esiintymä  19,31 % ,( lisääntynyt 1, 07 %)..

KP.3.1.1, esiintymä 3,86%, (lisääntynyt 3,18%)..

BA.3.2, esiintymä 2,15%, (vähentynyt .3.12%).

Muita  esiintyy 12.88 %, (lisääntynyt 1.93%).

WHO:n Sars-2 raportti tullut neljältä epiviikolta 23.2. 2026.Euroopassa on merkitsevåä sairastumista useisiin hengitystieviruksiin

 https://gisaid.org/sars-cov-2-phylogeny/global/

Because hCoV-19 mutates relatively slowly compared to some other RNA viruses, many mutations have little or no impact. However, some mutations or combinations of mutations have been associated with increased transmissibility, immune evasion, or changes in virulence — qualities that define variants of concern (VOCs) and variants of interest (VOIs) and that are included in this phylogenetic analysis according to WHO tracking variants updates.

Global prevalence of SARS-CoV-2 variants

No new SARS‑CoV‑2 variant data were available at the time of this update.

28 day prevalence of SARS-CoV-2 variants of interest and variants under monitoring with change on previous 28 days

World, 04 January to 01 February 2026

 



https://data.who.int/dashboards/covid19/cases?n=c

Number of COVID-19 cases reported to WHO

43,601 

‎−2,171decrease on previous 28 days

Reported COVID-19 cases
World, 28 days to 8 February 2026



World, 28 days to 8 February 2026

WHO will utilize various sources to continue monitoring the COVID-19 epidemiological situation via the WHO COVID-19 dashboard. If data for certain countries is unavailable in this section, it may indicate that they have either ceased reporting COVID-19 surveillance data to WHO or have integrated the COVID-19 surveillance into existing respiratory disease surveillance. In the latter case, SARS-CoV-2 detections from sentinel and systematic virological surveillance sites in those countries may be found in the Circulation section which also includes information on SARS-CoV-2 variant circulation. This global summary of COVID-19 cases includes data on confirmed cases reported to WHO from the comprehensive COVID-19 case monitoring.


fredag 20 februari 2026

Valaiseva tuore artikkeli nykyisistä Sars-2-Cov varianteista , erityisesti " Stratuksesta" XFG

 https://pmc.ncbi.nlm.nih.gov/articles/PMC12827822/

. 2026 Jan 10;16(1):8. doi: 10.1007/s44197-025-00510-x

The Emergence and Characterization of SARS-CoV-2 Variant XFG (“Stratus”): Comparative Virological, Epidemiological, and Public-Health Perspectives

PMCID: PMC12827822  PMID: 41519993

Abstract

Background

SARS-CoV-2 continues to diversify under the selective pressure of population immunity, with recombination increasingly contributing to the emergence of new lineages. The recombinant lineage XFG (“Stratus”), detected in early 2025, has attracted attention because it combines genetic features from distinct Omicron descendants and has expanded across multiple regions.SARS-CoV-2 continues to diversify under the selective pressure of population immunity, with recombination increasingly contributing to the emergence of new lineages. The recombinant lineage XFG (“Stratus”), detected in early 2025, has attracted attention because it combines genetic features from distinct Omicron descendants and has expanded across multiple regions.

Objective

To synthesize the current virological, immunological, epidemiological, and clinical evidence on XFG, and to contextualize its public-health significance through comparison with the closely related Omicron-derived lineages JN.1 and NB.1.8.1.…

Approach

This narrative review integrates available molecular and immune data with surveillance observations and emerging clinical reports, translating technical findings into implications that are relevant for healthcare systems and the people they serve.

Key findings

Across available datasets, XFG shows modest immune escape and a moderate growth advantage, yet there is no signal of increased clinical severity compared with recent Omicron sublineages. Current evidence supports the continued effectiveness of vaccines and antivirals, reinforcing that incremental viral adaptation is compatible with stable clinical outcomes in immunologically experienced populations.

Conclusions

XFG exemplifies ongoing, “quiet” SARS-CoV-2 evolution—more consistent with antigenic fine-tuning than a shift toward greater virulence. For individuals, the practical message remains steady: stay updated with vaccination when eligible and seek timely care when at higher risk. For health systems, sustained genomic surveillance, targeted protection of vulnerable groups, and measured risk communication remain central to resilient coexistence with SARS-CoV-2.

Keywords: SARS-CoV-2 variants, Omicron recombinants, XFG (Stratus), JN.1, NB.1.8.1, Immune escape, Genomic surveillance, Public-health preparedness

Introduction

WHO antaa viitteellisen taulukon sars-2 cov varianteista tämän vuoden alkukuun epiviikoilta

 

Table 3. Weekly prevalence of SARS-CoV-2 VOIs and VUMs

VariantVariant type21 Dec 202528 Dec 20254 Jan 202611 Jan 202618 Jan 2026
BA.3.2
VUM5.273.963.373.362.17
JN.1VOI7.043.724.274.724.25
KP.3.1.1
VUM2.062.011.320.870.76
LP.8.1
VUM0.530.240.060.250.09
NB.1.8.1
VUM1516.818.120.621.1
XFG
VUM62.265.365.663.161.7

Footnote: Variants presented in this table include the respective descendant lineages, except those individually specified elsewhere in the table.