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tisdag 12 juli 2022

Tähänastiset Sars-2 viruksen mainittavat rekombinantit . Uusin XAJ tullut mukaan 22.7. 2022.

 Rekombinantteja muodostui runsaasti vasta omikronien aikana. Jonkin verran havaittiin kyllä jo alfan ja deltan aikana, sekä deltan ja omikronin keskeisiäkin ilmeni.

 Alfan aikainen rekombinantti:

XA United Kingdom 100.0% 2021-01-30 43 design.
44 assign
Recombinant lineage with parental lineages B.1.1.7 and B.1.177, UK lineage

  Pääasiassa nykyään ilmenevät ovat omikronien keskeisiä. Ne eivät kuitenkaan näytä lähtevän tekemään mitään suurta  esiintymisaaltoa.Ne kutienkin heijastavat jotakin tilanteesta, ehkä long-covid-tapauksia tai kroonisia infektioita ja spill over mahdollisuuksia on tietysti, joten niitä monitoroidaan. 

 XB on  vähän tuntemattomampi rekombinantti pandemian alkuaikana:

XB United States of America 78.0%, Mexico 16.0%, Guatemala 3.0%, Honduras 2.0%, El_Salvador 1.0% 2020-07-08 729 design.
3,200 assign.
Recombinant lineage with parental lineages B.1.634 and B.1.631, Central and North America lineage, discussed in pango-designation issue #189. Formally B.1.628

XC muodostui  deltan ja alfan kesken: 

XC Japan 96.0%, United States of America 4.0% 2021-07-29 17 design 26 assign.
Recombinant lineage with parental lineages AY.29 and B.1.1.7, Japan lineage, from pango-designation issue #263 

XD on jo omikronin ajalta olevia deltarekombinantteja . Deltan kanssa teki  muutamia  rekombinantteja eniten  BA.1 ja BA.1.1. Viimeiset rekombinantit ovat  omikronien kesken. XZ rekombinantin jälkeen nimet ovat XAA, XAB, XAC jne.  Jos linjan määrittelyn lisäksi seurannassa vielä löytyy lisää (assigned- luku kasvaa: Painotan sen lukumäärän  tummalla.Pilkku osoittaa, jos luku kasvaa  tuhansiin (vain XE rekombinantilla)

XD France 67.0%, Denmark 29.0%, Netherlands 4.0% 2022-01-03 22 des. 24 ass.
Recombinant lineage of Delta and BA.1, France and Denmark lineage, from pango-designation issue #444
XE United Kingdom 78.0%, United States of America 13.0%, Israel 3.0%, Germany 2.0%, Ireland 1.0% 2022-01-19 225 des.  2,513 ass.
Recombinant lineage of BA.1 and BA.2, UK lineage, from pango-designation issue #454 Omicron
XF United Kingdom 100.0% 2022-01-07 34 33 Recombinant lineage of Delta and BA.1, UK lineage, from pango-designation issue #445
XG Denmark 97.0%, Germany 1.0%, United Kingdom 1.0%, United States of America 0.0%, Spain 0.0% 2022-01-11 140 214 Recombinant lineage of BA.1 and BA.2, Denmark lineage, from pango-designation issue #447
XH Denmark 98.0%, United Kingdom 2.0% 2021-12-30 42 54 Recombinant lineage of BA.1 and BA.2, Denmark lineage, from pango-designation issue #448
XJ Finland 94.0%, Sweden 3.0%, United Kingdom 1.0%, France 1.0% 2022-01-19 17 69 Recombinant lineage of BA.1 and BA.2, Finland lineage, from pango-designation issue #449
XK Belgium 100.0% 2022-02-10 15 15 Recombinant lineage of BA.1 and BA.2, Belgium lineage, from pango-designation issue #460
XL United Kingdom 88.0%, United States of America 12.0% 2022-02-06 38 64 Recombinant lineage of BA.1 and BA.2, UK lineage, from pango-designation issue #464
XM Germany 37.0%, United Kingdom 23.0%, Denmark 14.0%, Netherlands 12.0%, Czech_Republic 5.0% 2022-02-14 22 43 Recombinant lineage of BA.1.1 and BA.2, European lineage, from pango-designation issue #472
XN United Kingdom 95.0%, Denmark 4.0%, United States of America 1.0% 2022-02-13 76 106 Recombinant lineage of BA.1 and BA.2, UK lineage, from pango-designation issue #480
XP United Kingdom 100.0% 2022-02-22 54 57 Recombinant lineage of BA.1.1 and BA.2, UK lineage, from pango-designation issue #481
XQ United Kingdom 94.0%, United States of America 5.0%, Netherlands 2.0% 2022-02-12 56 64 Recombinant lineage of BA.1.1 and BA.2, UK lineage, from pango-designation issue #468
XR United Kingdom 100.0% 2022-02-13 65 78 Recombinant lineage of BA.1.1 and BA.2, UK lineage, from pango-designation issue #469
XS United States of America 100.0% 2022-01-19 36 37 Recombinant lineage of Delta and BA.1.1, USA lineage, from pango-designation issue #471
XT South_Africa 100.0% 2021-12-13 12 12 Recombinant lineage of BA.1 and BA.2, South Africa lineage, from pango-designation issue #478
XU India 71.0%, Japan 14.0%, Australia 14.0% 2022-01-20 7 7 Recombinant lineage of BA.1 and BA.2, lineage in India and other countries, from pango-designation issue #522
XV Denmark 81.0%, Italy 17.0%, Germany 2.0% 2022-01-31 42 42 Recombinant lineage of BA.1 and BA.2, lineage in Denmark and Italy, from pango-designation issue #463
XW United States of America 55.0%, Germany 27.0%, United Kingdom 12.0%, Canada 5.0%, Japan 2.0% 2022-03-13 48 60 Recombinant lineage of BA.1 and BA.2, USA, Germany, England lineage, from pango-designation issue #591
XY United States of America 90.0%, United Kingdom 6.0%, France 4.0% 2022-02-28 36 50 Recombinant lineage of BA.1 and BA.2, predominantly in USA, from pango-designation issue #606
XZ United States of America 99.0%, U.S._Virgin_Islands 1.0% 2022-03-19 61 68 Recombinant lineage of BA.2 and BA.1, USA lineage, from pango-designation issue #636
XAA United States of America 97.0%, Israel 3.0% 2022-02-12 49 58 Recombinant lineage of BA.1 and BA.2, USA lineage, from pango-designation issue #664
XAB Germany 84.0%, Denmark 6.0%, Italy 4.0%, Switzerland 2.0%, Slovakia 2.0% 2022-02-25 81 81 Recombinant lineage of BA.1 and BA.2, Germany lineage, from pango-designation issue #665
XAC Canada 75.0%, United States of America 22.0%, Netherlands 1.0%, United Kingdom 1.0%, Japan 1.0% 2022-01-11 129 166 Recombinant lineage of BA.1 and BA.2, Canada and USA lineage, from pango-designation issue #590
XAD Germany 86.0%, United Kingdom 7.0%, Peru 5.0%, Slovakia 2.0% 2022-02-15 42 42 Recombinant lineage of BA.2 and BA.1, Germany lineage, from pango-designation issue #607
XAE United States of America 54.0%, Chile 41.0%, Canada 3.0%, Netherlands 2.0% 2022-02-26 60 61 Recombinant lineage of BA.2 and BA.1, USA and Chile lineage, from pango-designation issue #637
XAF United States of America 50.0%, Costa_Rica 33.0%, Israel 8.0%, Chile 4.0%, Japan 4.0% 2022-03-11 71 24 Recombinant lineage of BA.1 and BA.2, Costa Rica lineage, from pango-designation issue #676
XAG Brazil 78.0%, Israel 7.0%, Denmark 6.0%, United States of America 6.0%, Germany 2.0% 2022-03-10 47 54 Recombinant lineage of BA.1 and BA.2, lineage in Brazil and other countries, from pango-designation issue #709
XAH Slovenia 67.0%, Italy 12.0%, Croatia 5.0%, Germany 4.0%, Sweden 3.0% 2022-02-22 58 73 Recombinant lineage of BA.2 and BA.1, lineage in Slovenia and other countries, from pango-designation issue #755

Lisää rekombinantteja on punninnassa. On tulossa mm. linjanmääritys  myös BA.4 ja BA.2  rekombinantille lähitulevaisuudessa. Kuten taulukosta näkee, nämä eivät kovin hanakasti näytä lisääntyvän.  Poikkeuksena  on XE.

Päivitys  22.7. 2022:  XAJ, uusin rekombinantti BA.2.12.1/ BA.4   on saanut designaationsa  17 tuntia sitten.  https://github.com/cov-lineages/pango-designation/issues/826


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