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tisdag 19 juli 2022

"Centauruksen" mutaatiolista löytyy Githubista.

 Mutaatioista ne, jotka  aiheuttivatvat uuden alalinjan designaation ehdotuksen, olen merkinnyt painotettuna  tummalla.  Varsinaiset linjaa designoivat mutaatiot on lisäksi alleviivattuna. G339D on mutatoitunut edelleen tässä variantissa muotoon 339H. Reversio   wuhan-muotoon 493R on tapahtunut  eikä näy luettelossa sen takia.

Show amino acid and nucleotide mutations separated | Show amino acid and nucleotide mutations together https://cov-spectrum.org/explore/World/AllSamples/Past6M/variants?pangoLineage=BA.2.75&

The following amino acid mutations are present in between of the sequences of this variant.

Show deletions

Sort by position | Sort by proportion | Sort by Jaccard similarity

  • •E:T9I (99.34%, 0.00)

    • C26270T (99.67%, 0.00)

  • •E:T11A (98.33%, 0.40)

    • A26275G (98.66%, 0.40)

  • •M:Q19E (97.97%, 0.00)

    • C26577G (98.31%, 0.00)

  • •M:A63T (99.34%, 0.00)

    • G26709A (99.67%, 0.00)

  • •N:P13L (98.31%, 0.00)

    • C28311T (98.64%, 0.00)

  • •N:R203K (99.32%, 0.00)

    • G28881A (99.33%, 0.00)

    • G28882A (99.66%, 0.00)

  • •N:G204R (98.99%, 0.00)

    • G28883C (99.32%, 0.00)

  • •N:S413R (98.67%, 0.00)

    • A29510C (99.00%, 0.00)

  • •ORF1a:S135R (92.81%, 0.00)

    • T670G (97.94%, 0.00)

  • •ORF1a:T842I (97.28%, 0.00)

    • C2790T (97.62%, 0.00)

  • •ORF1a:S1221L (98.65%, 0.41)

    • C3927T (98.99%, 0.41)

  • •ORF1a:G1307S (97.05%, 0.00)

    • G4184A (97.38%, 0.00)

  • •ORF1a:P1640S (97.23%, 0.06)

    • C5183T (97.58%, 0.06)

  • •ORF1a:A2891V (8.94%, 0.02)

    • C8937T (8.94%, 0.02)

  • •ORF1a:L3027F (98.95%, 0.00)

    • C9344T (99.31%, 0.00)

  • •ORF1a:T3090I (97.90%, 0.00)

    • C9534T (98.26%, 0.00)

  • •ORF1a:L3201F (96.11%, 0.00)

    • C9866T (96.48%, 0.00)

  • •ORF1a:T3255I (97.20%, 0.00)

    • C10029T (97.56%, 0.00)

  • •ORF1a:P3395H (99.34%, 0.00)

    • C10449A (99.67%, 0.00)

  • •ORF1a:F3677L (21.72%, 0.00)

    • T11294- (65.30%, 0.00)

    • T11295- (65.30%, 0.00)

    • T11296- (65.06%, 0.00)

    • T11296G (21.56%, 0.00)

  • •ORF1a:N4060S (96.67%, 0.77)

    • A12444G (97.00%, 0.77)

  • •ORF1b:P314L (99.34%, 0.00)

    • C14408T (99.67%, 0.00)

  • •ORF1b:G662S (95.65%, 0.02)

    • G15451A (95.97%, 0.02)

  • •ORF1b:R1315C (98.03%, 0.00)

    • C17410T (98.36%, 0.00)

  • •ORF1b:I1566V (99.00%, 0.00)

    • A18163G (99.33%, 0.00)

  • •ORF1b:V1706I (10.82%, 0.04)

    • G18583A (10.86%, 0.04)

  • •ORF1b:T2163I (95.02%, 0.00)

    • C19955T (95.36%, 0.00)

  • •ORF3a:T223I (99.33%, 0.00)

    • C26060T (99.66%, 0.00)

  • •ORF6:D61L (97.33%, 0.00)

    • G27382C (97.99%, 0.00)

    • A27383T (97.66%, 0.00)

    • T27384C (97.66%, 0.00)

  • •ORF9b:P10S (98.31%, 0.00)

  • •ORF9b:E27V (9.20%, 0.00)

  • •S:T19I (95.83%, 0.00)

    • C21618T (95.83%, 0.00)

  • •S:A27S (64.26%, 0.00)

    • G21641- (64.26%, 0.00)

  • •S:G142D (89.95%, 0.00)

    • G21987A (90.05%, 0.00)

  • •S:K147E (81.92%, 0.17)

    • A22001G (81.92%, 0.17)

  • •S:W152R (95.82%, 0.33)

    • T22016C (95.44%, 0.45)

  • •S:F157L (94.33%, 0.05)

    • C22033A (94.33%, 0.05)

  • •S:I210V (95.55%, 0.29)

    • A22190G (95.55%, 0.28)

  • •S:V213G (94.78%, 0.00)

    • T22200G (94.80%, 0.00)

  • •S:G257S (94.34%, 0.17)

    • G22331A (94.38%, 0.17)

  • •S:G339H (92.81%, 0.72)

    • G22577C (93.15%, 0.72)

    • G22578A (98.98%, 0.00)

  • •S:G339D (6.16%, 0.00)     

    • G22577C (93.15%, 0.72)

    • G22578A (98.98%, 0.00)

  • •S:S371F (95.70%, 0.00)

    • C22674T (95.36%, 0.00)

  • •S:S373P (95.70%, 0.00)

    • T22679C (95.70%, 0.00)

  • •S:S375F (97.07%, 0.00)

    • C22686T (96.40%, 0.00)

  • •S:T376A (96.70%, 0.00)

    • A22688G (96.70%, 0.00)

  • •S:D405N (99.30%, 0.00)

    • G22775A (99.30%, 0.00)

  • •S:R408S (97.81%, 0.00)

    • A22786C (97.83%, 0.00)

  • •S:K417N (96.24%, 0.00)

    • G22813T (96.24%, 0.00)

  • •S:N440K (96.95%, 0.00)

    • T22882G (96.96%, 0.00)

  • •S:G446S (98.48%, 0.00)

    • G22898A (98.48%, 0.00)

  • •S:N460K (97.39%, 0.29)

    • T22942G (97.40%, 0.33)

  • •S:S477N (98.46%, 0.00)

    • G22992A (98.46%, 0.00)

  • •S:T478K (98.06%, 0.00)

    • C22995A (98.06%, 0.00)

  • •S:E484A (98.85%, 0.00)

    • A23013C (98.47%, 0.00)

  • •S:Q498R (99.24%, 0.00)

    • A23055G (99.24%, 0.00)

  • •S:N501Y (98.48%, 0.00)

    • A23063T (98.48%, 0.00)

  • •S:Y505H (99.24%, 0.00)

    • T23075C (99.24%, 0.00)

  • •S:D614G (99.34%, 0.00)

    • A23403G (99.34%, 0.00)

  • •S:H655Y (99.02%, 0.00)

    • C23525T (99.02%, 0.00)

  • •S:N679K (99.00%, 0.00)

    • T23599G (99.00%, 0.00)

  • •S:P681H (98.67%, 0.00)

    • C23604A (98.67%, 0.00)

  • •S:N764K (96.99%, 0.00)

    • C23854A (96.99%, 0.00)

  • •S:D796Y (98.52%, 0.00)

    • G23948T (98.53%, 0.00)

  • •S:Q954H (93.08%, 0.00)

    • A24424T (93.40%, 0.00)

  • •S:N969K (95.47%, 0.00)

    • T24469A (95.80%, 0.00)

Additional nucleotide mutations:

  • • T2C (14.29%, 0.00)

  • • C44T (20.16%, 0.00)

  • • C241T (94.42%, 0.00)

  • • C3037T (98.29%, 0.00)

  • • C3796T (98.01%, 0.35)

  • • C4321T (97.92%, 0.00)

  • • C4586T (95.39%, 0.06)

  • • A9424G (96.28%, 0.00)

  • • C10198T (95.72%, 0.00)

  • • G10447A (99.67%, 0.00)

  • • C12880T (99.34%, 0.00)

  • • C25416T (99.34%, 0.00)

  • • C25584T (99.67%, 0.00)

  • • C26858T (99.34%, 0.00)

  • • A27259C (99.33%, 0.00)

  • • C27807T (99.66%, 0.00)

  • • A28271T (99.33%, 0.00)


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