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lördag 13 juni 2020

Mistä syystä DPH5 olisi SARS-2 viruksen ORF9b proteiinin interaktioproteiini?

Koska en tarkemmin tiedä tästä DPH5 geenistä ja sen biosynteesin merkityksestä ihmiskehossa,  teen Google haun ensiksi.
Tulos:
https://biocyc.org/HUMAN/NEW-IMAGE?type=PATHWAY&object=PWY-6482
 
Pathway Summary from MetaCyc:
Diphthamide is a unique posttranslationally modified histidine residue found only in translation elongation factor 2 ( elongation factor 2). This factor is found in archaebacteria and in all eukaryotes, but not in eubacteria, and is conserved from archaebacteria to humans. The role of diphthamide is still not understood. Mutants defective in its biosynthesis are viable in yeast, but mutant mice are retarded in growth and development, and almost always die before birth [Liu06a, Webb08]. A potential role of diphthamide may be to protect ribosomes fom ribosome-inactivating proteins (such as ricin), which are widely distributed in nature [Gupta08].
The conversion of L-histidine to Diphthamide is a complex process. It starts by the transfer of a 3-amino-3-carboxypropyl moiety from S-adenosyl-L-methionine. Four different genes of Saccharomyces cerevisiae have been shown to be required for this step. Three of these genes, DPH1, DPH2 and DPH3, are believed to form a 2-(3-amino-3-carboxypropyl)histidine synthase complex [Mattheakis93, Liu04d]. The fourth gene, DPH4, is similar to DnaJ-type chaperones, and is assumed to be responsible for the proper folding of one or more of the other DPH proteins [Liu04d].
The next step, catalyzed by the DPH5-encoded diphthine synthase, is the transfer of three methyl groups, donated by three molecules of S-adenosyl-L-methionine, to form a diphtine residue [Mattheakis92]. The last step is the amidation of diphtine to diphthamide, catalyzed by the DPH6-encoded diphthine—ammonia ligase [Su12a].
Diphthamide serves as the target for two important bacterial toxins - the diphtheria toxin (DT) and the Pseudomonas endotoxin A. Both toxins catalyze the transfer of ADP-D-ribose from NAD+ to a diphthamide-[translation elongation factor 2] on eEF-2, inactivating it and halting cellular protein synthesis, causing cell death [Liu04d]. By targeting this unique modified amino acid which does not exist in bacteria, these pathogens are able to shut down the eukaryotic protein synthesis machinery without jeopardizing their own system.
Locations of Mapped Genes:
Superclasses: BiosynthesisAmino Acid BiosynthesisModification of Amino Acid Within Proteins

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