Kirjoitan muutamia näistä muistiin sitä mukaa kun löydän niistä tietoja:
Omicron-variantti lähti kehittymään linjasta B.1.1.529. Tätä esimuotoa merkattiin sittemmin kirjaimilla BA.
(Eräs toinen alalinja Mu-varianteista ( ei-omikron) sai taas merkinnän BB. Se oli B.1.621.1, mutta siitä ei sittemmin kuulunut mitään erityistä.. Siteeraan sen kuitenkin tähän ja Githubtekstiä siltä ajalta: “ And one can click on Chile's regions to realize that at one point, this Mu variety accounted for almost all of Atacama's sequences. But apparently not anymore. The strain dynamics in this region has several weirdly quick sweeps. Before mid-August 2021 it was Chile's usual Gamma / Lambda mix. Then Mu arrived and in just one months achieved total dominance (mostly, but not only, this substrain). Then Delta arrived and in another month the sweep was complete, with the classic Mu going away first, and the Mu+S:449N+S583D holding for only a little bit longer “.
Lineage |
Most common countries |
Earliest date |
# designated |
# assigned |
Description |
WHO Name |
|---|---|---|---|---|---|---|
United States of America 96.0%, France 1.0%, Colombia 1.0%, Canada 1.0%, Dominican_Republic 1.0% |
2021-04-13 |
238 |
371 |
Alias of B.1.621.1.2, from pango-designation issue #232 |
(Sitten oli Deltan dominanssiaikaa ja AY-linjoja)
Deltan (AY- linjojen) voittokulun jälkeen BA- linjasta tuottui aluksi omikroneja BA.1, BA.1.1 ja sitten BA.2 ja ne alkoivat saada runsaasti alalinjoja. Myös BA.3 havaittiin varhain. Sekin sai vähän alalinjoja. Tänä vuonna on alkanut esiintyä BA.4 ja BA.5 ja ne saavat nyt alalinjoja.
Seurannassa onkin sitten jouduttu käyttämään ensin numeroita aika pitkälle alalinjahaaroittumille, mutta jos numerorivi on vaikea käsitellä, otetaan taas kirjainkoodeista apua alalinjojen alalinjoille.
Kirjoitan alekkain tähänastisia omikronien lyhennyksiä ja niitten toiset (alias) nimet.
BC= B.1.1.529.1.1.1 = BA.1.1.1
BD =B.1.1.529.1.17.2 = BA.1.17.2
BE =B.1.1.529.5.3.1 = BA.5.3.1
BF =B.1.1.529.5.2.1 = BA.5.2.1
BG = B.1.1.529.2.12.1 = BA.2.12.1
BH =B.1.1.529.2.38.3 = BA.2.38.3
BJ = B.1.1.529.2.10.1 = BA.2.10.1
BK =B.1.1.529.5.1.10 = BA.5.1.10
BL = B.1.1.529.2.75.1 = BA.2.75.1
BM = B.1.1.529.2.75.3 = BA.2.75.3
BN= B.1.1.529.2.75.5 = BA.2.75.5
BP =B.1.1.529. 2.3.16 = BA.2.3.16
BQ = B.1.1.529.5.3.1.1.1.1 = BE.1.1.1
BR =B.1.1.529.2.75.4 = BA.2.75.4.
Niistä muutama saa useita alalinjoja ja muutamilla taas on ehkä vain yksi alalinja toistaiseksi PANGO-luettelossa esillä.
Tässä huomaa että BA.2.75 näyttää esiintyvän usein.Se on immunoevasiivinen . Se ilmentää BA.5 linjan suhteen konvergoituvaa evoluutiota. BA.5- linjasta BE.1.1.1 puolestaan on nopein BA.5 alalinja.
Tässä ei ole kyse rekombinanttien (X) koodeista, vaan omikron-päälinjojen (parent) alalinjoista ja alalinjojen alalinjoista.
(Rekombinanttien nimet ovat toisen otsikon alla).
Näistä päävarianttien erityisesti lisääntyvistä alalinjoista saa tietoa joko koodikirjaimilla tai “.1” kirjaimien jälkeen asetettuna tai siten niiden alias-nimellä.
Lineage |
Most common countries |
Earliest date |
# designated |
# assigned |
Description |
WHO Name |
|---|---|---|---|---|---|---|
Japan 100.0%, United States of America 0.0%, Kenya 0.0%, Vietnam 0.0% |
2021-01-13 |
5781 |
6156 |
|||
Peru 80.0%, Canada 11.0%, Chile 2.0%, Kenya 2.0%, Germany 2.0% |
2021-12-16 |
96 |
128 |
Alias of B.1.1.529.1.1.1.2, Peru lineage, from pango-designation issue #570 |
Lineage |
Most common countries |
Earliest date |
# designated |
# assigned |
Description |
WHO Name |
|---|---|---|---|---|---|---|
United Kingdom 97.0%, Germany 0.0%, Denmark 0.0%, Switzerland 0.0%, France 0.0% |
2021-03-02 |
4404 |
5417 |
Alias of B.1.1.529.1.17.2.1, UK lineage, from pango-designation issue #461 |
Lineage |
Most common countries |
Earliest date |
# designated |
# assigned |
Description |
WHO Name |
|---|---|---|---|---|---|---|
United States of America 28.0%, United Kingdom 19.0%, Germany 6.0%, Australia 5.0%, Denmark 4.0% |
2020-07-21 |
1974 |
18057 |
Alias of B.1.1.529.5.3.1.1, mainly found in South Africa, Austria and England, from pango-designation issue #625 |
||
Germany 47.0%, Denmark 9.0%, United States of America 8.0%, United Kingdom 7.0%, France 4.0% |
2022-02-01 |
6941 |
33253 |
|||
48 |
0 |
Alias of B.1.1.529.5.3.1.1.1.1, found globally, from pango-designation issue #931 |
||||
United States of America 56.0%, Costa_Rica 31.0%, Panama 3.0%, France 3.0%, South_Korea 1.0% |
2022-06-19 |
41 |
157 |
Alias of B.1.1.529.5.3.1.1.2, mainly found in Costa Rica and USA, from pango-designation issue #923 |
||
594 |
0 |
|||||
United States of America 51.0%, Belgium 16.0%, Mexico 10.0%, France 4.0%, Germany 4.0% |
2022-04-06 |
247 |
773 |
|||
United States of America 83.0%, Denmark 3.0%, Canada 2.0%, Germany 2.0%, Japan 1.0% |
2022-01-19 |
1426 |
5425 |
Alias of B.1.1.529.5.3.1.3, USA lineage |
Lineage |
Most common countries |
Earliest date |
# designated |
# assigned |
Description |
WHO Name |
|---|---|---|---|---|---|---|
United Kingdom 24.0%, United States of America 14.0%, Germany 12.0%, Japan 10.0%, Spain 7.0% |
2020-07-23 |
1146 |
7295 |
Alias of B.1.1.529.5.2.1.1, mainly found in England, Denmark, Spain and Scotland, from pango-designation issue #618 |
||
United States of America 87.0%, Canada 3.0%, Denmark 2.0%, Germany 2.0%, Ireland 1.0% |
2022-04-28 |
122 |
365 |
|||
Denmark 31.0%, France 27.0%, Japan 9.0%, United Kingdom 7.0%, United States of America 6.0% |
2022-04-30 |
138 |
1030 |
|||
India 51.0%, United States of America 15.0%, Singapore 7.0%, United Kingdom 5.0%, Japan 4.0% |
2022-05-03 |
188 |
994 |
|||
India 61.0%, United States of America 14.0%, Japan 8.0%, Singapore 8.0%, Israel 3.0% |
2022-06-01 |
40 |
170 |
Alias of B.1.1.529.5.2.1.3.1, mainly found India, Singapore, and USA, from pango-designation issue #825 |
||
United Kingdom 34.0%, United States of America 29.0%, Japan 6.0%, Canada 6.0%, Germany 4.0% |
2022-04-29 |
382 |
1872 |
Alias of B.1.1.529.5.2.1.4, mainly found in England, from pango-designation issue #788 |
||
Israel 37.0%, Japan 22.0%, United States of America 13.0%, Denmark 4.0%, Germany 4.0% |
2020-07-21 |
3330 |
21756 |
|||
United Kingdom 61.0%, United States of America 7.0%, Germany 6.0%, Denmark 4.0%, Ireland 4.0% |
2022-05-24 |
160 |
968 |
Alias of B.1.1.529.5.2.1.6, mainly found in England and Scotland, from pango-designation issue #821 |
||
Belgium 27.0%, Germany 11.0%, United States of America 10.0%, Denmark 10.0%, France 10.0% |
2022-05-13 |
368 |
2869 |
Alias of B.1.1.529.5.2.1.7, mainly found in Belgium, England and Denmark, from pango-designation issue #827 |
||
United States of America 85.0%, Mexico 4.0%, Canada 2.0%, Japan 1.0%, Denmark 1.0% |
2022-05-10 |
706 |
2587 |
|||
Canada 65.0%, United States of America 29.0%, Belgium 1.0%, Israel 1.0%, United Kingdom 1.0% |
2022-05-28 |
84 |
430 |
|||
United States of America 74.0%, Canada 12.0%, Japan 3.0%, United Kingdom 2.0%, Denmark 1.0% |
2020-07-25 |
1351 |
8169 |
|||
United Kingdom 60.0%, United States of America 17.0%, Germany 7.0%, Denmark 3.0%, France 2.0% |
2022-06-21 |
245 |
507 |
Alias of B.1.1.529.5.2.1.11, mainly found in England, from pango-designation issue #837 |
||
Japan 20.0%, Brazil 16.0%, Austria 13.0%, France 12.0%, United States of America 9.0% |
2022-05-06 |
63 |
334 |
Alias of B.1.1.529.5.2.1.12, mainly found Austria, Brazil, and England, from pango-designation issue #752 |
||
United States of America 94.0%, Germany 2.0%, France 1.0%, Australia 1.0%, Canada 0.0% |
2022-06-10 |
36 |
327 |
Alias of B.1.1.529.5.2.1.13, mainly found in USA, from pango-designation issue #883 |
||
Austria 89.0%, Czech_Republic 3.0%, United Kingdom 1.0%, United States of America 1.0%, Germany 1.0% |
2022-06-20 |
60 |
439 |
Alias of B.1.1.529.5.2.1.14, mainly found in Austria, from pango-designation issue #843 |
||
Australia 26.0%, United States of America 17.0%, United Kingdom 11.0%, Ireland 10.0%, Sri_Lanka 7.0% |
2022-06-16 |
56 |
160 |
Alias of B.1.1.529.5.2.1.15, Sri Lanka lineage, from pango-designation issue #893 |
||
59 |
0 |
Alias of B.1.1.529.5.2.1.16, found in USA, from pango-designation issue #942 |
||||
217 |
0 |
|||||
252 |
0 |
|||||
70 |
0 |
|||||
141 |
0 |
Alias of B.1.1.529.5.2.1.20, lineage in Kenya and other countries |
||||
2941 |
0 |
|||||
63 |
0 |
Alias of B.1.1.529.5.2.1.22, mainly found in Japan, from pango-designation issue #1010 |
Lineage |
Most common countries |
Earliest date |
# designated |
# assigned |
Description |
WHO Name |
|---|---|---|---|---|---|---|
Peru 83.0%, United States of America 8.0%, United Kingdom 4.0%, Aruba 2.0%, Mexico 1.0% |
2022-04-15 |
37 |
276 |
Alias of B.1.1.529.2.12.1.1, Peru lineage, from pango-designation issue #679 |
||
United States of America 72.0%, Canada 11.0%, Denmark 5.0%, United Kingdom 3.0%, Peru 1.0% |
2022-02-26 |
351 |
1031 |
Alias of B.1.1.529.2.12.1.2, mainly found in USA, and Denmark, from pango-designation issue #767 |
||
Peru 85.0%, United States of America 12.0%, Belgium 1.0%, Mexico 1.0%, France 1.0% |
2022-05-03 |
29 |
165 |
Alias of B.1.1.529.2.12.1.3, mainly found in Peru, from pango-designation issue #784 |
||
Israel 59.0%, United States of America 10.0%, United Kingdom 8.0%, Canada 6.0%, South_Korea 3.0% |
2022-05-01 |
111 |
233 |
|||
United States of America 84.0%, Japan 4.0%, Canada 2.0%, United Kingdom 1.0%, South_Korea 1.0% |
2022-04-09 |
1244 |
1708 |
Alias of B.1.1.529.2.12.1.5, mainly found in USA, from pango-designation issue #763 |
||
Peru 86.0%, Canada 11.0%, Colombia 2.0%, United Kingdom 2.0% |
2022-05-10 |
41 |
65 |
Alias of B.1.1.529.2.12.1.6, Peru lineage, from pango-designation issue #836 |
Lineage |
Most common countries |
Earliest date |
# designated |
# assigned |
Description |
WHO Name |
|---|---|---|---|---|---|---|
India 57.0%, United States of America 23.0%, Canada 6.0%, Germany 3.0%, Japan 3.0% |
2022-06-23 |
15 |
65 |
Alias of B.1.1.529.2.38.3.1, mainly found in India, from pango-designation issue #913 |
Lineage |
Most common countries |
Earliest date |
# designated |
# assigned |
Description |
WHO Name |
|---|---|---|---|---|---|---|
India 75.0%, Austria 10.0%, Singapore 5.0%, South_Korea 5.0%, United States of America 5.0% |
2022-06-29 |
6 |
20 |
Alias of B.1.1.529.2.10.1.1, mainly found in India (West Bengal), from pango-designation issue #915 |
Lineage |
Most common countries |
Earliest date |
# designated |
# assigned |
Description |
WHO Name |
|---|---|---|---|---|---|---|
United States of America 86.0%, Canada 9.0%, United Kingdom 1.0%, Denmark 1.0%, Japan 1.0% |
2022-06-09 |
93 |
567 |
Alias of B.1.1.529.5.1.10.1, mainly found in USA, and Canada, from pango-designation issue #901 |
Lineage |
Most common countries |
Earliest date |
# designated |
# assigned |
Description |
WHO Name |
|---|---|---|---|---|---|---|
India 46.0%, United States of America 11.0%, Singapore 11.0%, Australia 11.0%, Japan 5.0% |
2022-07-03 |
26 |
114 |
Alias of B.1.1.529.2.75.1.1, mainly found in India from pango-designation issue #944, S:R346T on polytomy |
Lineage |
Most common countries |
Earliest date |
# designated |
# assigned |
Description |
WHO Name |
|---|---|---|---|---|---|---|
21 |
0 |
Alias of B.1.1.529.2.75.3.1, mainly found in India, pango-designation issue #965 |
||||
50 |
0 |
Alias of B.1.1.529.2.75.3.1.1, mainly found in India (West Bengal), defined by S:346T |
||||
20 |
0 |
Alias of B.1.1.529.2.75.3.2, mainly found in India (Telangana), defined by S:346T |
||||
17 |
0 |
Alias of B.1.1.529.2.75.3.3, found in Nepal and globally, defined by ORF1b:P1652S |
Lineage |
Most common countries |
Earliest date |
# designated |
# assigned |
Description |
WHO Name |
|---|---|---|---|---|---|---|
11 |
0 |
Alias of B.1.1.529.2.75.5.1, mainly found in India, pango-designation issue #994 |
||||
30 |
0 |
Alias of B.1.1.529.2.75.5.2, mainly found in India, pango-designation issue #1021 |
||||
6 |
0 |
Alias of B.1.1.529.2.75.5.2.1, mainly USA and Canada lineage, defined by S:H49Y and S:F490S |
Lineage |
Most common countries |
Earliest date |
# designated |
# assigned |
Description |
WHO Name |
|---|---|---|---|---|---|---|
6 |
0 |
Alias of B.1.1.529.2.3.16.1, Oceania/South East Asia lineage, from pango-designation issue #1009 |
Lineage |
Most common countries |
Earliest date |
# designated |
# assigned |
Description |
WHO Name |
|---|---|---|---|---|---|---|
18 |
0 |
Alias of B.1.1.529.5.3.1.1.1.1.1, Nigeria lineage, from pango-designation issue #993 |
Lineage |
Most common countries |
Earliest date |
# designated |
# assigned |
Description |
WHO Name |
|---|---|---|---|---|---|---|
12 |
0 |
Alias of B.1.1.529.2.75.4.1, mainly found in India (Karnataka), defined by S:K444M |
Tähän asti löydän näitä uusia koodinimiä nyt 12.9. 2022 ja uudella koodilla nimettyjä definioituja linjoja. Viikko on vasta alullaan. Päivitän myöhemmin.
20.9. 2022 havaitsen jo seuraavia alalinjoja:
BS.1 Tämä on BA.2.3.2 alalinjan (koodi BS) alalinja BS.1 Vietnamista . Sillä on 7 extramutaatiota S1 osassa Spike-proteiinia.. Tästä on otsikko erikseen 20.9.2022.
BT.1. Tämä on BA.5.1 alalinja, jossa on Orf 1b :D1903N ja Orf1b:G662S, Sekvenssejä 1120 ,lähinnä.Gambiasta.
BU.1. Tämä on BA.5.2.16.1 ja sisältää S:444M ja S: 440K.
BV.1 . Tämä on entinen linja , uudelleen nimetty, BA.5.2.17, joka sai uuden parent-linjan BA.5. 2.20 (koodi BV) ja on sen alalinja BV.1.
BW.1 Tämä on BA.5.6.2 alainjan (koodi BW) alalinja. Sillä on S: N460K ja sitä on Mexikossa.
BY.1. Tämä on BA.2.76.6.1. Sisältää mutaation F486S. Kaksi päivää siten saanut virstanpylväänsä. https://github.com/cov-lineages/pango-designation/commits/master/pango_designation
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