Leta i den här bloggen

måndag 16 januari 2023

SARS-CoV-2 rekombinanttien viimeisin PANGO-linjapäivitys valmiiksi saaduista GITHUB määritelmistä

 

https://github.com/cov-lineages/pango-designation/blob/master/lineage_notes.txt


Valmiiksi saadut rekombinanttimääritelmät viime GITHUB-master päivityksissä n. 14.1.2023 aikoihin sitaattina. Varsinkin XBB.1.5 rekombinanttiklusteri on työn alla.


XA Recombinant lineage with parental lineages B.1.1.7 and B.1.177, UK lineage

XB Recombinant lineage with parental lineages B.1.634 and B.1.631, Central and North America lineage, discussed in pango-designation issue #189. Formally B.1.628

XC Recombinant lineage with parental lineages AY.29 and B.1.1.7, Japan lineage, from pango-designation issue #263

XD Recombinant lineage of Delta and BA.1, France and Denmark lineage, from pango-designation issue #444

XE Recombinant lineage of BA.1 and BA.2, UK lineage, from pango-designation issue #454

XF Recombinant lineage of Delta and BA.1, UK lineage, from pango-designation issue #445

XG Recombinant lineage of BA.1 and BA.2, Denmark lineage, from pango-designation issue #447

XH Recombinant lineage of BA.1 and BA.2, Denmark lineage, from pango-designation issue #448

XJ Recombinant lineage of BA.1 and BA.2, Finland lineage, from pango-designation issue #449

XK Recombinant lineage of BA.1 and BA.2, Belgium lineage, from pango-designation issue #460

XL Recombinant lineage of BA.1 and BA.2, UK lineage, from pango-designation issue #464

XM Recombinant lineage of BA.1.1 and BA.2, European lineage, from pango-designation issue #472

XN Recombinant lineage of BA.1 and BA.2, UK lineage, from pango-designation issue #480

XP Recombinant lineage of BA.1.1 and BA.2, UK lineage, from pango-designation issue #481

XQ Recombinant lineage of BA.1.1 and BA.2, UK lineage, from pango-designation issue #468

XR Recombinant lineage of BA.1.1 and BA.2, UK lineage, from pango-designation issue #469

XS Recombinant lineage of Delta and BA.1.1, USA lineage, from pango-designation issue #471

XT Recombinant lineage of BA.1 and BA.2, South Africa lineage, from pango-designation issue #478

XU Recombinant lineage of BA.1 and BA.2, lineage in India and other countries, from pango-designation issue #522

XV Recombinant lineage of BA.1 and BA.2, lineage in Denmark and Italy, from pango-designation issue #463

XW Recombinant lineage of BA.1 and BA.2, USA, Germany, England lineage, from pango-designation issue #591

XY Recombinant lineage of BA.1 and BA.2, predominantly in USA, from pango-designation issue #606

XZ Recombinant lineage of BA.2 and BA.1, USA lineage, from pango-designation issue #636

XAA Recombinant lineage of BA.1 and BA.2, USA lineage, from pango-designation issue #664

XAB Recombinant lineage of BA.1 and BA.2, Germany lineage, from pango-designation issue #665

XAC Recombinant lineage of BA.1 and BA.2, Canada and USA lineage, from pango-designation issue #590

XAD Recombinant lineage of BA.2 and BA.1, Germany lineage, from pango-designation issue #607

XAE Recombinant lineage of BA.2 and BA.1, USA and Chile lineage, from pango-designation issue #637

XAF Recombinant lineage of BA.1 and BA.2, Costa Rica lineage, from pango-designation issue #676

XAG Recombinant lineage of BA.1 and BA.2, lineage in Brazil and other countries, from pango-designation issue #709

XAH Recombinant lineage of BA.2 and BA.1, lineage in Slovenia and other countries, from pango-designation issue #755

XAJ Recombinant lineage of BA.2.12.1 and BA.4, predominantly in England, from pango-designation issue #826

XAK Recombinant lineage of BA.1 and BA.2, Germany lineage, from pango-designation issue #823

XAL Recombinant lineage of BA.1 and BA.2, Germany lineage, from pango-designation issue #757

XAM Recombinant lineage of BA.1.1 and BA.2.9, lineage mainly found in Panama and USA, from pango-designation issue #759

XAN Recombinant lineage of BA.2 and BA.5.1, lineage found most often in Spain and Denmark, from pango-designation issue #771

XAP Recombinant lineage of BA.2* and BA.1*, USA lineage, from pango-designation issue #789

XAQ Recombinant lineage of BA.1* and BA.2*, lineage mainly found in Canada, from pango-designation issue #798

XAR Recombinant lineage of BA.1* and BA.2*, Reunion lineage, from pango-designation issue #860

XAS Recombinant lineage of BA.5* and BA.2*, USA lineage, from pango-designation issue #882

XAT Recombinant lineage of BA.2.3.13 and BA.1*, Japan lineage, from pango-designation issue #885

XAU Recombinant lineage of BA.1.1* and BA.2.9*, predominantly in Spain, England and France, from pango-designation issue #894

XAV Recombinant lineage of BA.2* and BA.5*, mainly France, USA, and Scotland lineage, from pango-designation issue #911

XAW Recombinant lineage of BA.2* and AY.122, Russia lineage, from pango-designation issue #895

XAY Recombinant lineage of BA.2 and AY.45, South Africa lineage, from pango-designation issue #844

XAY.1 South Africa/US lineage with 4 AA substitutions including S:D253G

XAY.1.1 South Africa with S:R346T and ORF1a:K2108N, from issue #1255

XAY.1.2 Europe, ORF1a:T3646I

XAY.2 South Africa/Denmark/Israel lineage with ORF1a:Y3765C

XAY.3 South Africa/Mauritius/Switzerland/France, ORF1b:D1869Y

XAZ Recombinant lineage of BA.2.5, BA.5. and BA.2.5, predominantly found in France, Germany, Croatia, Denmark and USA, from pango-designation issue #797

XBA Recombinant lineage of perhaps AY.45 and perhaps BA.2 (with perhaps 5 breakpoints), South_Africa lineage, constellation 2 from pango-designation issue #844

XBB Recombinant lineage of BJ.1 and BA.2.75 with breakpoint in S1, found in USA and Singapore, from issue #1058

XBB.1 Mostly Bangladesh and Singapore, defined by S:G252V, from issue #1088

XBB.1.1 Singapore/Denmark, defined by ORF1a:P309L

XBB.1.2 Singapore, defined by S:S640F

XBB.1.3 Singapore, India/Italy, defined by S:A484T

XBB.1.4 Europe, S:T883I

XBB.1.4.1 Mainly Denmark, Norway and Sweden, defined by S:S673G, from pango-designation issue #1352

XBB.1.5 USA, S:F486P

XBB.1.6 USA, S:L216F, S:H146K, from issue #1428

XBB.1.7 USA-NY, S:V608I

XBB.1.8 Denmark, S:186insSGG, C3241T

XBB.1.9 ORF1a:G1819S, ORF1a:T4175I

XBB.1.9.1 S:F486P, England/South Korea/Singapore/Denmark

XBB.2 Defined by S:D253G, from issue #1173

XBB.2.1 Defined by S:N764S

XBB.2.2 Defined by S:Q613H

XBB.3 Defined by ORF1b:I1988V on ORF1a:D82G branch

XBB.3.1 Defined by S:Q677R, India-TN/Singapore, from issue #1241

XBB.3.2 Defined by S:M177T

XBB.3.3 Defined by S:V1122L, USA

XBB.4 Defined by S:K444R on ORF1a:D82G branch, from issue #1239

XBB.4.1 England/Austria, S:L5F, S:T470N

XBB.5 Defined by S:A653V on ORF1a:D82G branch, India-TN, Singapore, Australia

XBB.6 Defined by C14178T, USA/India/England

XBB.6.1 Defined by S:F486P, USA, from #1459

XBC Recombinant lineage of BA.2 and B.1.617.2*, predominantly in Philippines, from pango-designation issue #1100

XBC.1 Mostly Philippines, South Korea, US, Singapore, defined by S:L452M, from issue #1130

XBC.1.1 Mostly Australia, ORF1a:I3619T, ORF8:V114L

XBC.1.1.1 Australia, S:G476S

XBC.1.2 Philippines/Netherlands/Denmark, T11269C

XBC.1.2.1 Denmark, ORF1b:T132I

XBC.2 Mostly Philippines, defined by S:K97R

XBD Recombinant lineage of BA.2.75.2 and BF.5, India and world, from pango-designation issue #1137

XBE Recombinant lineage of BA.5.2 and BE.4.1, predominantly in USA and England, from pango-designation issue #1246

XBF Recombinant lineage of BA.5.2.3 and CJ.1, Australia, from pango-designation issue #1259

XBG Recombinant lineage of BA.2.76 and BA.5.2, predominantly in UK, from pango-designation issue #896

XBH Recombinant lineage of BA.2.3.17 and BA.2.75.2, predominantly in Brunei, from pango-designation issue #1229

XBJ Recombinant lineage of BA.2.3.20 and BA.5.2, possibly Philippines, from pango-designation issue #1268

XBK Recombinant lineage of BA.5.2 and CJ.1, Denmark/Europe, from pango-designation issue #1418

XBL Recombinant lineage of XBB.1 with S:F486P and BA.2.75, Malaysia, from issue #1532

XBM Recombinant lineage of BA.2.76 and BF.3, India/USA/Canada, from issue #1441

Inga kommentarer:

Skicka en kommentar