Leta i den här bloggen

onsdag 22 oktober 2014

(PAMP) Tollin kaltaiset reseptorit ,ligandit sijainteineen, adaptorit sijainteineen, solutyypit (Kertausta!)

http://www.nature.com/onc/journal/v27/n2/fig_tab/1210906f1.html

Summary of known mammalian TLRs

http://en.wikipedia.org/wiki/Toll-like_receptor

Toll-like receptors bind and become activated by different ligands, which, in turn, are located on different types of organisms or structures. They also have different adapters to respond to activation and are located sometimes at the cell surface and sometimes to internal cell compartments. Furthermore, they are expressed by different types of leucocytes or other cell types:
Receptor Ligand(s)[27] Ligand location[27] Adapter(s) Location Cell types[27]
TLR 1 multiple triacyl lipopeptides Bacteria MyD88/MAL cell surface
TLR 2 multiple glycolipids Bacteria MyD88/MAL cell surface
multiple lipopeptides Bacteria
multiple lipoproteins Bacteria
lipoteichoic acid Gram-positive bacteria
HSP70 Host cells
zymosan (Beta-glucan) Fungi
Numerous others
TLR 3 double-stranded RNA, poly I:C viruses TRIF cell compartment
  • Dendritic cells
  • B lymphocytes
TLR 4 lipopolysaccharide Gram-negative bacteria MyD88/MAL/TRIF/TRAM cell surface
several heat shock proteins Bacteria and host cells
fibrinogen host cells
heparan sulfate fragments host cells
hyaluronic acid fragments host cells
nickel
Various opioid drugs
TLR 5 flagellin Bacteria rowspan=2| MyD88 cell surface
  • monocyte/macrophages
  • a subset of dendritic cells
  • Intestinal epithelium
[[profilin[31]]] Toxoplasma gondii
TLR 6 multiple diacyl lipopeptides Mycoplasma MyD88/MAL cell surface
  • monocytes/macrophages
  • Mast cells
  • B lymphocytes
TLR 7 imidazoquinoline small synthetic compounds MyD88 cell compartment
loxoribine (a guanosine analogue)
bropirimine
single-stranded RNA RNA viruses
TLR 8 small synthetic compounds; single-stranded RNA
MyD88 cell compartment
  • monocytes/macrophages
  • a subset of dendritic cells
  • Mast cells
TLR 9 unmethylated CpG Oligodeoxynucleotide DNA Bacteria, DNA viruses MyD88 cell compartment
  • monocytes/macrophages
  • Plasmacytoid dendritic cells[29]
  • B lymphocytes
TLR 10 unknown
unknown  ?
TLR 11 Profilin Toxoplasma gondii[32] MyD88 cell compartment[33]
TLR 12 Profilin Toxoplasma gondii[34] MyD88
  • Neurons[35]
  • plasmacytoid dendritic cells
  • conventional dendritic cells
  • macrophages
TLR 13 [36][37] bacterial ribosomal RNA sequence “CGGAAAGACC” Virus, bacteria MyD88, TAK-1 cell compartment
  • monocytes/macrophages
  • conventional dendritic cells

Kartta viruksen herättämästä virusvasteesta isäntäsolussa

Kuva: dsRNA ja RIG-1

PACT , PKRKA-geenin tuote

http://www.ncbi.nlm.nih.gov/protein/CAG38556.1 
 
ORIGIN      
        1 msqsrhraea ppleredsgt fslgkmitak pgktpiqvlh eygmktknip vyecersdvq
       61 ihvptftfrv tvgditctge gtskklakhr aaeaainilk anasicfavp dplmpdpskq
      121 pknqlnpigs lqelaihhgw rlpeytlsqe ggpahkreyt ticrlesfme tgkgaskkqa
      181 krnaaekfla kfsnispenh isltnvvghs lgctwhslrn spgekinllk rsllsipntd
      241 yiqllseiak eqgfnityld idelsangqy qclaelstsp itvchgsgis cgnaqsdaah
      301 nalqylkiia erk
 
 
Osa-alueet.
 FEATURES             Location/Qualifiers
     source          1..313
                     /organism="Homo sapiens"
                     /db_xref="taxon:9606"
                     /clone="RZPDo834D0120D"
                     /clone_lib="Human Full ORF Clones Gateway(TM) - RZPD"
                     /lab_host="DH10B"
                     /note="Vector: pDONR201, Site_1: attP1; Site_2: attP2"
     Protein         1..313
                     /name="PRKRA"
     Region          34..99
                     /region_name="DSRM"
                     /note="Double-stranded RNA binding motif. Binding is not
                     sequence specific but is highly specific for double
                     stranded RNA. Found in a variety of proteins including
                     dsRNA dependent protein kinase PKR, RNA helicases,
                     Drosophila staufen protein, E. coli RNase III; cd00048"
                     /db_xref="CDD:238007"
     Site            order(34,40..41,82..85,88)
                     /site_type="other"
                     /note="dsRNA binding site [nucleotide binding]"
                     /db_xref="CDD:238007"
     Region          126..192
                     /region_name="DSRM"
                     /note="Double-stranded RNA binding motif. Binding is not
                     sequence specific but is highly specific for double
                     stranded RNA. Found in a variety of proteins including
                     dsRNA dependent protein kinase PKR, RNA helicases,
                     Drosophila staufen protein, E. coli RNase III; cd00048"
                     /db_xref="CDD:238007"
     Site            order(126,132..133,175..178,181)
                     /site_type="other"
                     /note="dsRNA binding site [nucleotide binding]"
                     /db_xref="CDD:238007"
     Region          240..306
                     /region_name="DSRM"
                     /note="Double-stranded RNA binding motif. Binding is not
                     sequence specific but is highly specific for double
                     stranded RNA. Found in a variety of proteins including
                     dsRNA dependent protein kinase PKR, RNA helicases,
                     Drosophila staufen protein, E. coli RNase III; cd00048"
                     /db_xref="CDD:238007"
     Site            order(240,246..247,289..292,295)
                     /site_type="other"
                     /note="dsRNA binding site [nucleotide binding]"
                     /db_xref="CDD:238007"
     CDS             1..313
 

Ebolavirus VP35, RIG-I ja RAX (PACT) . Millä strategialla voisi vastavaikuttaa viruksen evaasiostrategiaan?

Miten voi kiertää ebolan VP35 aiheuttaman inhibition antivirusvasteessa?
 Sitaatti 22. Nov 2014 

 2014Nov    Molecular Basis for Ebolavirus VP35 Suppression of Human Dendritic Cell Maturation.
 J. Virol. J Virol 2014 Nov 20;88(21):12500-10. Epub 2014 Aug 20.
 Benjamin Yen, Lubbertus C F Mulder, Osvaldo Martinez, Christopher F Basler
  •  Zaire ebolavirus (EBOV) VP35 is a double-stranded RNA (dsRNA)-binding protein that inhibits RIG-I signaling and alpha/beta interferon (IFN-α/β) responses by both dsRNA-binding-dependent and -independent mechanisms.
  •  VP35 also suppresses dendritic cell (DC) maturation. 
Here, we define the pathways and mechanisms through which VP35 impairs DC maturation. Wild-type VP35 (VP35-WT) and two well-characterized VP35 mutants (F239A and R322A) that independently ablate dsRNA binding and RIG-I inhibition were delivered to primary human monocyte-derived DCs (MDDCs) using a lentivirus-based expression system.
VP35-WT suppressed not only IFN-α/β but also proinflammatory responses following stimulation of MDDCs with activators of RIG-I-like receptor (RLR) signaling, including RIG-I activators such as Sendai virus (SeV) or 5'-triphosphate RNA, or MDA5 activators such as encephalomyocarditis virus (EMCV) or poly(I·C).
The F239A and R322A mutants exhibited greatly reduced suppression of IFN-α/β and proinflammatory cytokine production following treatment of DCs with RLR agonists.  
VP35-WT also blocked the upregulation of DC maturation markers and the stimulation of allogeneic T cell responses upon SeV infection, whereas the mutants did not.
 In contrast to the RLR activators, VP35-WT and the VP35 mutants impaired IFN-β production induced by Toll-like receptor 3 (TLR3) or TLR4 agonists but failed to inhibit proinflammatory cytokine production induced by TLR2, TLR3, or TLR4 agonists.
Furthermore, VP35 did not prevent lipopolysaccharide (LPS)-induced upregulation of surface markers of MDDC maturation and did not prevent LPS-triggered allogeneic T cell stimulation.

Therefore, VP35 is a general antagonist of DC responses to RLR activation. However, TLR agonists can circumvent many of the inhibitory effects of VP35.
 Therefore, it may be possible to counteract EBOV immune evasion by using treatments that bypass the VP35-imposed block to DC maturation.

The VP35 protein, which is an inhibitor of RIG-I signaling and alpha/beta interferon (IFN-α/β) responses, has been implicated as an EBOV-encoded factor that contributes to suppression of dendritic cell (DC) function.
 We used wild-type VP35 and previously characterized VP35 mutants to clarify VP35-DC interactions. Our data demonstrate that VP35 is a general inhibitor of RIG-I-like receptor (RLR) signaling that blocks not only RIG-I- but also MDA5-mediated induction of IFN-α/β responses.

Furthermore, in DCs, VP35 also impairs the RLR-mediated induction of proinflammatory cytokine production, upregulation of costimulatory markers, and activation of T cells. These inhibitory activities require VP35 dsRNA-binding activity, an activity previously correlated to VP35 RIG-I inhibitory function.

 In contrast, while VP35 can inhibit IFN-α/β production induced by TLR3 or TLR4 agonists, this occurs in a dsRNA-independent fashion, and VP35 does not inhibit TLR-mediated expression of proinflammatory cytokines. These data suggest strategies to overcome VP35 inhibition of DC function.

Affiliation Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, New York, USA chris.basler@mssm.edu.

Ihmisen PRKRA geenituote PACT eli RAX. on eri virusten arsenaalissa huomioonotettu

ID: 8575
protein kinase, interferon-inducible double stranded RNA dependent activator [Homo sapiens (human)] Chromosome 2, NC_000002.12 (178431414..178451231, complement)HSD14, DYT16, PACT, RAX603424

 PRKRA geeni sijaitsee kromosomissa 2q31.2. Sen muut nimet ovat RAX, PACT, DYT16, HSD14.
Geenin koodaama proteiinikinaasi aktivoituu dsRNA.sta, ja välittää  virusinfektion interferonivasteet esiin.
Tämän geenin mutaatioissa  havaitaan aasosiaatiota dystoniaan.  Vaihtoehtoinen pleissautumienn johtaa moniin  transkriptivariantteihin. .

Also known as RAX; PACT; DYT16; HSD14 Summary This gene encodes a protein kinase activated by double-stranded RNA which mediates the effects of interferon in response to viral infection. Mutations in this gene have been associated with dystonia. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2008] 

  • Kommenttini: 
  • KOSKA   PACT herättää  tehokkaan antivirusvasteen8 interferonit),  viruksilla on jokin pätevä omaproteiini, jolla estää  interferonijärjestelmän heräämisen.  On vain joka viruksen  arsenaalista löydettävä, mikä  milläkin viruksella toimii  tässä  evaasiotiessä. 
  •  HIV- infektiossa PACT on estynyt. Ebolan  VP35  tekee tyhjäksi  PACT välitteisen  interferonien  kehkeyttämisen. Myös influenssaviruksella on keinonsa . 
Lisätietoa PACT proteiinista, yli 10 vuoden takaa, jolloj PACT oli aika uusi löytö.

Sci STKE. 2001 Jul 3;2001(89):re1. PACT and PKR: turning on NF-kappa B in the absence of virus.

Tiivistelmä

  •  RNA-kaksoissäikeestä riippuvainen proteiiniminaasi R (PKR)  on yleisesti katosttu sellaiseksi, jota ainoastaan  dsRNA säätää. (ds RNA taas on  välituotemuoto monien virusten   replikaatiosta ja ilmaise solun proteiiniverkostolle,  että  Virusta on solussa!).
Double-stranded RNA (dsRNA)-dependent protein kinase R (PKR) has been generally thought to be solely regulated by dsRNA, an intermediate in the replication of many viruses.
  •  Mutta uudemmat  löydöt  ( 2001) ovat kyseenalaistaneet  käsityksen PKR:n  osuudesta ainoana sensorina  virusinfektiosta, on nimittäin havaittu että PKR-aktiivisuuden  muuntelut vaikutavat solukasvuun ja lisäksi on keksitty PACT,  PKR-aktivaattori, jonka virus indusoi.
 However, the notion that PKR acts solely as a sensor for viral infection has been challenged by recent findings that alteration of PKR activity has effects on cellular growth and by the discovery of a virus-independent activator of PKR, a cellular protein called PACT (PKR-activating protein).
  •  Isäntäsolun anvivirusvaste on osoittautunut olevan taustatekijä  tuman transkriptiotekijän (NF-kB)  aktivoitumisessa.
The activation of the transcription factor nuclear factor kappa B (NF-kappaB) by PKR has been shown to account for the host antiviral response. 
  •  Vuonna 2001 tiedemiehet  tekivät yhteenvedon niistä molekulaarisista mekanismeista,, mitkä johtivat NF-kB aktivaatioon PKR:llä ja sitten he keskustelivat  pääasiallisista  vielä silloin vastausta vailla olleista kysymyksistä.
  •  (1)  Onko PACT  vaihtoehtoismuoto dsRNA:n havaitsemisessa  suorana  PKR-NF-kappaB-signaali- tien aktivaatiossa?
  • (2) Miten PACT itse aktivoituu ja tulee kohdennetuksi PKR:lle. 
  • (3)  mitkä on PKR.n  biologiset funktiot silloin kun ei ole virusinfektiota solussa?
We summarize the most recent findings on the molecular mechanisms leading to the activation of NF-kappaB by PKR and discuss three major unanswered questions. First, is PACT an alternative to dsRNA as a direct activator of the PKR-NF-kappaB pathway? Second, how is PACT itself activated and targeted to PKR? And third, what are the biological functions of PKR in the absence of viral infection?
 

Geenit RIG-I (RLR-1) , MDA5 ( RLR-2), LGP-2 (RLR-3), Dicer

Results: 6

  • ihmisen 
  • Filters activated: Current only. Clear all to show 6 items.
Name/Gene IDDescriptionLocationAliasesMIM
ID: 23586
DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [Homo sapiens (human)] Chromosome 9, NC_000009.12 (32455302..32526324, complement)RP11-334P12.2, RIG-I, RIGI, RLR-1609631
ID: 64135
interferon induced with helicase C domain 1 [Homo sapiens (human)] Chromosome 2, NC_000002.12 (162267079..162318708, complement)AGS7, Hlcd, IDDM19, MDA-5, MDA5, RLR-2606951
ID: 1659
DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Homo sapiens (human)] Chromosome 17, NC_000017.11 (43483962..43526815)DDX8, HRH1, PRP22, PRPF22600396
ID: 11269
DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B [Homo sapiens (human)] Chromosome 16, NC_000016.10 (70289767..70333832)DBP5, DDX19, RNAh605812
ID: 79132
DEXH (Asp-Glu-X-His) box polypeptide 58 [Homo sapiens (human)] Chromosome 17, NC_000017.11 (42101404..42112733, complement)D11LGP2, D11lgp2e, LGP2, RLR-3608588
ID: 23405
dicer 1, ribonuclease type III [Homo sapiens (human)] Chromosome 14, NC_000014.9 (95086228..95157422, complement)DCR1, Dicer, Dicer1e, HERNA, MNG1, RMSE2