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måndag 27 oktober 2025

SLC30A sinkinkuljettajat ZNT siirtävät sikkiä pois sytoplamasta ulos solusta ja erilaisiin erilaisiin organelleihin ja sinkkihomeostaasissa.

 https://www.researchgate.net/publication/322712966_SLC30A_family_expression_in_the_pancreatic_islets_of_humans_and_mice_cellular_localization_in_the_b-cells ZNT perhettä on 10 ja niillä   alaperheet  I-IV.  Tämän fylogeneettinen puu voidaan piirtää toisiaan kuin puuna, jonka lehdet tippuvat, jota ymmärretään, että suunta on  poispäin tavalla tai toisella.  Puun lehdestäkin teitysti luonnossa  imeytyy ravinteita takaisinpäin, muta   sinkillä on se homeostaasi se  järki tässä  ideassa.  Homeostaasi näiden kahden voiman välillä. https://www.researchgate.net/figure/of-the-ZNT-family-a-phylogenetic-tree-of-the-ZNT-family-members-Amino-acid-sequences-of_fig1_322712966

 

 Nämä ulos sytoplasman alueesta sinkkiä siirtävät  ZNT(SLC39A)  kuljettajat    suorittavat päinvastaista toimintaa kuin   ZIP (SLC39A)

ZIP (SLC39A) sinkinkuljettajaperheen alaperheet ovat neljä I, II, LIV-1 ja gufA. Vastaavat sinkinpuutteeseen ja asettavat sinkkiä tarvittaviin kohtiin sinkkitasapainossa.

 SLC39A  sinkinkuljettajaproteiinien ZIP alaperheet

Subfamily, Alaperhe I:

 ZIP9 

Alaperhe II:

ZIP1, ZIP2, ZIP3.

Alaperhe  LIV-1:

ZIP4, ZIP5, ZIP6, ZIP7, ZIP8, ZIP10, ZIP13, ZIP14._ 

Alaperhe GufA: 

ZIP11. 

https://pmc.ncbi.nlm.nih.gov/articles/PMC3602797/

  •  Alla olevasta artikkelista löytyy ZIP (SKC39A perheen  fylogeneetinen puu alaperheineen.FIGURE1. 
 
. 2016 Aug 11;473(16):2531–2544. doi: 10.1042/BCJ20160388

Zinc transporter ZIP10 forms a heteromer with ZIP6 which regulates embryonic development and cell migration


PMCID: PMC4980808  PMID: 27274087
  •  

    Lintuinfluenssa nostaa päätään Ruotsissa, kertoo Aftonbladet tänään erityisen mainnan 27.10.2025

     

    Jordbruksverket har även beslutat om högriskområden i södra Sverige från och med 27 oktober för att skydda svenska fågelbesättningar.

    Det innebär att alla fjäderfän inom högriskområdet ska hållas inomhus.

    Enligt myndigheten är det en ovanligt hög smittspridning av fågelinfluensa i vår omvärld nu i år.

    Djurägare uppmanas därför att direkt ta kontakt med en veterinär om deras fjäderfän plötsligt dör eller blir sjuka.

    DENGUE j reseptori , yksi monista: (Tigh junction- komponentti) Claudin1) CLDN1-CD81 (tetraspanin)

     

    UniProtKB/Swiss-Prot Summary for CLDN1 Gene

    Claudins function as major constituents of the tight junction complexes that regulate the permeability of epithelia. While some claudin family members play essential roles in the formation of impermeable barriers, others mediate the permeability to ions and small molecules. Often, several claudin family members are coexpressed and interact with each other, and this determines the overall permeability. CLDN1 is required to prevent the paracellular diffusion of small molecules through tight junctions in the epidermis and is required for the normal barrier function of the skin. Required for normal water homeostasis and to prevent excessive water loss through the skin, probably via an indirect effect on the expression levels of other proteins, since CLDN1 itself seems to be dispensable for water barrier formation in keratinocyte tight junctions (PubMed:23407391). ( CLD1_HUMAN,O95832 )

    (Microbial infection) Acts as a co-receptor for hepatitis C virus (HCV) in hepatocytes (PubMed:17325668, 20375010, 24038151). Associates with CD81 and the CLDN1-CD81 receptor complex is essential for HCV entry into host cell (PubMed:20375010).

    Acts as a receptor for dengue virus (PubMed:24074594). ( CLD1_HUMAN,O95832 ) Dengue disease is becoming a huge public health concern around the world as more than one-third of the world's population living in areas at risk of infection. In an effort to assess host factors interacting with dengue virus, we identified claudin-1, a major tight junction component, as an essential cell surface protein for dengue virus entry. When claudin-1 was knocked down in Huh 7.5 cells via shRNA, the amount of dengue virus entering host cells was reduced. Consequently, the progeny virus productions were decreased and dengue virus-induced CPE was prevented. Furthermore, restoring the expression of claudin-1 in the knockdown cells facilitated dengue virus entry. The interaction between claudin-1 and dengue viral prM protein was further demonstrated using the pull-down assay. Deletion of the extracellular loop 1 (ECL1) of claudin-1 abolished such interaction, so did point mutations C54A, C64A and I32M on ECL1. These results suggest that the interaction between viral protein prM and host protein claudin-1 was essential for dengue entry. Since host and viral factors involved in virus entry are promising therapeutic targets, determining the essential role of claudin-1 could lead to the discovery of entry inhibitors with attractive therapeutic potential against dengue disease.

     

    • AI mainitsee että Dengue käyttää useita reseptoreita. Katson jonki artikkelin.  

    https://link.springer.com/article/10.1007/s40475-013-0002-7 

    • Glycosaminoglycans (GAGs) and other attachment factors

    The first molecule that was identified to participate in DENV entry into mammalian cells was heparan sulfate [2022]. Highly sulfated GAGs are ubiquitous molecules present on the surface of several types of cells, also mediating attachment for many viruses [23]. It is documented that there are electrostatic attractions among a dengue virus E glycoprotein and the negatively charged carbohydrate moieties present in GAGs [24]. Due to the documented evidence that the GAGs-DENV interactions are stronger when the virus has been passaged in cell-culture repetitively, and due to its correlation with in vivo attenuation, it has been suggested its role is artifactual.

     The most relevant attachment factor for DENV entry identified so far is the calcium-dependent lectin, dendritic cell-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) [2527]. This receptor has high affinity for high-mannose ligands [28]. During the mosquito blood-meal, DENV is deposited in the dermis where its interaction with resident dendritic cells (Langerhans cells) has been documented [6]. Upon entry, dendritic cells migrate to draining lymph nodes where the infection is spread to immune-competent myelo-monocytic cells. Whether DC-SIGN is the only factor responsible for dengue virus entry or the virus replicates actively in dendritic cells is still unknown. 

    Another lectin that may play a role in dengue virus attachment is the C-type lectin domain family-5 member A (CLEC5) [29, 30]. This molecule has been documented to participate in viral attachment and release of pro-inflammatory mediators important in the pathogenesis of severe forms of dengue [31, 32]. In sum, it is clear that the first step in dengue virus entry involves attachment of the virion to the cell surface.

    • Cell surface chaperones

    Among DENV entry factors identified thus far, there is a group that has been described by independent groups, the surface chaperones. Experimentally, these molecules have been found through binding assays using the envelope glycoprotein as a ligand. HSP-90, HSP-70 and GRP-78 are thought to be part of a receptor complex that mediates dengue entry into human cells from monocytic, neural and hepatic origin [33, 34]. It is not known whether their extracellular function is similar to their well-known intracellular, ATP-dependent protein folding activity, or how they associate with the cell membrane. It has been long been reported that lipopolysaccharide (LPS) inhibits DENV entry into monocytes [35]. This effect is dose dependent. On this regard, surface HSPs were also documented as part of an interacting cluster of plasmatic proteins mediating physiological effects of LPS sensing on cells [36]. It is tempting to propose that heat shock as an effect on DENV entry through the increase of heat-shock-responsive molecules on the surface of infected cells. This effect was documented in the infection of a monocytic cell line [37]. Another protein with chaperone function reported as a DENV receptor is the protein disulfide isomerase (PDI). This has been implicated in DENV entry into endothelial cells [38•]. Besides its important role in the endoplasmic reticulum, it has been detected on the cell surface of lymphocytes [39], platelets [40, 41], and endothelial cells [38•]. PDI has been implicated in entry of several viruses such as polyomavirus [42], New Castle disease virus [43], and the human immunodeficiency virus [39, 44, 45].

    • Lipid receptors

     (PtdSer)rec TIM1-TAM ligands

    The only gain-of-function screening in the search for DENV receptors found that phosphatydilserine (PtdSer) receptors TIM-1 (T cell immunoglobulin domain and mucin domain) directly and indirectly through TAM ligands, are relevant on DENV entry into the human 293 T cell line [46•]. These receptors mediate binding of apoptotic cells to be scavenged and immunotolerance. Therefore, an intimate interaction of cell receptors with lipids present on the virion membrane envelope suggests the structure of entering particles needs to be revisited. In any case, the lipid content present on the target cell has long been demonstrated as important to optimize DENV entry.

     

    torsdag 23 oktober 2025

    DENGUE2 infektion, P. falciparum malarian ja Borrelian invaasiota ja disseminaatiota lisää plasminogeenin pilkkoutumistuote plasmiini

     https://www.uniprot.org/uniprotkb/P00747/entry#function

    Olen katsomassa plasminogeenin  pilkkoutuistuotteita plasmiini ja angiostatiini. Sivumennen huomaan maininnan dengue2 virustulehduksesta . 

     

    Function

    function

    Plasmin dissolves the fibrin of blood clots and acts as a proteolytic factor in a variety of other processes including embryonic development, tissue remodeling, tumor invasion, and inflammation. In ovulation, weakens the walls of the Graafian follicle. It activates the urokinase-type plasminogen activator, collagenases and several complement zymogens, such as C1, C4 and C5 (PubMed:6447255).
    Cleavage of fibronectin and laminin leads to cell detachment and apoptosis. Also cleaves fibrin, thrombospondin and von Willebrand factor. Its role in tissue remodeling and tumor invasion may be modulated by CSPG4. Binds to cells
    Angiostatin is an angiogenesis inhibitor that blocks neovascularization and growth of experimental primary and metastatic tumors in vivo.
    (Microbial infection) ENO/enoloase from parasite P.falciparum (strain NF54) interacts with PLG present in the mosquito blood meal to promote the invasion of the mosquito midgut by the parasite ookinete (PubMed:21949403).
    The catalytic active form, plasmin, is essential for the invasion of the mosquito midgut (PubMed:21949403).
    (Microbial infection) Binds to OspC on the surface of B.burgdorferi cells, possibly conferring an extracellular protease activity on the bacteria that allows it to traverse host tissue.
    (Microbial infection) Interacts with dengue virus type 2 particles (PubMed:31726374).
    Enhances dengue virus type 2 infection in Aedes aegypti mosquito midgut by increasing midgut internalization, resulting in higher infection rates and viral dissemination in mosquitoes
    (PubMed:31726374).

    Miscellaneous

    Plasmin is inactivated by alpha-2-antiplasmin immediately after dissociation from the clot.

    Catalytic activity

    Preferential cleavage: Lys-|-Xaa > Arg-|-Xaa, higher selectivity than trypsin. Converts fibrin into soluble products.
    EC:3.4.21.7 (UniProtKB | ENZYME
    | Rhea
    )

    Activity regulation

    Converted into plasmin by plasminogen activators, both plasminogen and its activator being bound to fibrin. Activated with catalytic amounts of streptokinase. Plasmin activity inhibited by SERPINE2.

    Features

    Showing features for site, binding site, active site.

    73

    måndag 13 oktober 2025

    Rokotteen POXvirus VACV ilmentää immunomodulatorisia proteiineja kuten BTB-BACK-Kelch-kaltaisia(BBK) proteiineja. Muita POX viruksia ja niiden koodaamia proteiineja

     1.2 LSDV  cluster 

    28 results

    Genomic Analysis of Lumpy Skin Disease Virus from Western and Central Africa Suggests a Distinct Sub-Lineage Within the 1.2 LSDV Cluster.
    Fadele J, Ogunsanya O, Adedokun O, Ayinla A, Pami M, Sijuwola A, Saibu F, Soumare H, Fanou U, Brown C, Faburay B, Happi C, Happi A. Pathogens. 2025 Sep 12;14(9):922. doi: 10.3390/pathogens14090922. PMID: 41011822 Free PMC article.
    Phylogenetic evaluation revealed that LSDV strains from Nigeria and Cameroon cluster within the classical 1.2 lineage. Furthermore, the two sequences from this study cluster with the only publicly available sequence from West and Central Africa, supporting earlier findings of the presence of a West/Central African sub-lineage. Functional genomic analysis identified mutations in genes encoding ankyrin repeat Kelch-like proteins, and envelope proteins involved in immune evasion and viral virulence, raising concerns about vaccine effectiveness. Furthermore, the detection of LSDV in flesh flies (Sarcophaga spp.) underlines their potential role in virus transmission. These findings highlight the importance of genomic monitoring and targeted surveillance.toistoisia KELCH-proteiinien kaltaisia 
    Genetic Evolutionary Analysis of Lumpy Skin Disease Virus Strain Under Immune Pressure Exerted by Heterologous Goat Poxvirus Vaccines.
    Chang W, Fang J, Zhai T, Han S, Fan W, Lei C, Wang L, Qi X, Xue Q, Wang J. Transbound Emerg Dis. 2025 Feb 23;2025:2883245. doi: 10.1155/tbed/2883245. eCollection 2025. PMID: 40302761 Free PMC article.
    Recently, LSD has occurred frequently in Asia. The attenuated goat poxvirus (GTPV) vaccine is widely used to prevent LSD in cattle in China; however, sporadic cases of LSD still occur in immunized cattle. ...There are several open reading frames (ORFs) differences between …
    Genomic characterization of Lumpy Skin Disease virus (LSDV) from India: Circulation of Kenyan-like LSDV strains with unique kelch-like proteins.
    Kumar A, Venkatesan G, Kushwaha A, Poulinlu G, Saha T, Ramakrishnan MA, Dhar P, Kumar GS, Singh RK. Acta Trop. 2023 May;241:106838. doi: 10.1016/j.actatropica.2023.106838. Epub 2023 Feb 15. PMID: 36796571
    Phylogenetic analysis based on complete genome sequence suggested that LSDV-WB/IND/19 is closely related to Kenyan LSDV strains with 10-12 variants with non-synonymous changes confined to LSD_019, LSD_049, LSD_089, LSD_094, LSD_096, LSD_140, and LSD_144 genes. In contrast to comp …
    Emergence of a new lumpy skin disease virus variant in Kurgan Oblast, Russia, in 2018.
    Aleksandr K, Pavel P, Olga B, Svetlana K, Vladimir R, Yana P, Alexander S. Arch Virol. 2020 Jun;165(6):1343-1356. doi: 10.1007/s00705-020-04607-5. Epub 2020 Apr 11. PMID: 32279139
    Due to these incongruent phylogenetic patterns, the sequences of three additional loci ORF19 (Kelch-like protein), ORF52 (putative transcriptional elongation factor), and ORF87 (mutT motif protein) were investigated. ...
    Kelch-like proteins: Physiological functions and relationships with diseases.
    Shi X, Xiang S, Cao J, Zhu H, Yang B, He Q, Ying M. Pharmacol Res. 2019 Oct;148:104404. doi: 10.1016/j.phrs.2019.104404. Epub 2019 Aug 20. PMID: 31442578 Review.
    Kelch-like gene family members (KLHLs) encode proteins with a bric-a-brac, tramtrack, broad complex (BTB)/poxvirus and zinc finger (POZ) domain, a BACK domain, and six Kelch motifs, which frequently interact with Cullin3 to form E3 ligase complexes tha
    Extended sequencing of vaccine and wild-type capripoxvirus isolates provides insights into genes modulating virulence and host range.
    Biswas S, Noyce RS, Babiuk LA, Lung O, Bulach DM, Bowden TR, Boyle DB, Babiuk S, Evans DH. Transbound Emerg Dis. 2020 Jan;67(1):80-97. doi: 10.1111/tbed.13322. Epub 2019 Aug 30. PMID: 31379093
    The genus Capripoxvirus in the subfamily Chordopoxvirinae, family Poxviridae, comprises sheeppox virus (SPPV), goatpox virus (GTPV) and lumpy skin disease virus (LSDV), which cause the eponymous diseases across parts of Africa, the Middle East and Asia. ...In particular, s …
    Vaccinia Virus BBK E3 Ligase Adaptor A55 Targets Importin-Dependent NF-κB Activation and Inhibits CD8+ T-Cell Memory.
    Pallett MA, Ren H, Zhang RY, Scutts SR, Gonzalez L, Zhu Z, Maluquer de Motes C, Smith GL. J Virol. 2019 May 1;93(10):e00051-19. doi: 10.1128/JVI.00051-19. Print 2019 May 15. PMID: 30814284 Free PMC article.

    Viral infection of cells is sensed by pathogen recognition receptors that trigger an antiviral innate immune response, and consequently viruses have evolved countermeasures. Vaccinia virus (VACV) evades the host immune response by expressing scores of immunomodulatory proteins. One family of VACV proteins are the BTB-BACK (broad-complex, tram-trac, and bric-a-brac [BTB] and C-terminal Kelch [BACK]) domain-containing, Kelch-like (BBK) family of predicted cullin-3 E3 ligase adaptors: A55, C2, and F3. Previous studies demonstrated that gene A55R encodes a protein that is nonessential for VACV replication yet affects viral virulence in vivo Here, we report that A55 is an NF-κB inhibitor acting downstream of IκBα degradation, preventing gene transcription and cytokine secretion in response to cytokine stimulation. A55 targets the host importin α1 (KPNA2), acting to reduce p65 binding and its nuclear translocation. Interestingly, while A55 was confirmed to coprecipitate with cullin-3 in a BTB-dependent manner, its NF-κB inhibitory activity mapped to the Kelch domain, which alone is sufficient to coprecipitate with KPNA2 and inhibit NF-κB signaling. Intradermal infection of mice with a virus lacking A55R (vΔA55) increased VACV-specific CD8+ T-cell proliferation, activation, and cytotoxicity in comparison to levels of the wild-type (WT) virus. Furthermore, immunization with vΔA55 induced increased protection to intranasal VACV challenge compared to the level with control viruses. In summary, this report describes the first target of a poxvirus-encoded BBK protein and a novel mechanism for DNA virus immune evasion, resulting in increased CD8+ T-cell memory and a more immunogenic vaccine.

    IMPORTANCE NF-κB is a critical transcription factor in the innate immune response to infection and in shaping adaptive immunity. The identification of host and virus proteins that modulate the induction of immunological memory is important for improving virus-based vaccine design and efficacy. In viruses, the expression of BTB-BACK Kelch-like (BBK) proteins is restricted to poxviruses and conserved within them, indicating the importance of these proteins for these medically important viruses. Using vaccinia virus (VACV), the smallpox vaccine, we report that the VACV BBK protein A55 dysregulates NF-κB signaling by disrupting the p65-importin interaction, thus preventing NF-κB translocation and blocking NF-κB-dependent gene transcription. Infection with VACV lacking A55 induces increased VACV-specific CD8+ T-cell memory and better protection against VACV challenge. Studying viral immunomodulators therefore expands not only our understanding of viral pathogenesis and immune evasion strategies but also of the immune signaling cascades controlling antiviral immunity and the development of immune memory.

    Keywords: BTB-Kelch; E3 ligase; NF-κB; cullin-3; importins; protein A55; vaccinia virus.

    VARV B22R homologue as phylogenetic marker gene for Capripoxvirus classification and divergence time dating.
    Mishra B, Mondal P, Patel CL, Zafir I, Gangwar R, Singh N, Sonowal J, Bisht D, Sahu AR, Baig M, Sajjanar B, Singh RK, Gandham RK. Virus Genes. 2019 Feb;55(1):51-59. doi: 10.1007/s11262-018-1613-9. Epub 2018 Nov 16. PMID: 30446925
    …Sheeppox disease is associated with significant losses in sheep production world over. The sheep pox virus, the goatpox virus, and the lumpy skin disease virus cannot be distinguished by conventional serological tests. Identification of these pathogens needs molecular methods. In this study, seven genes viz. EEV maturation protein-F12L, Virion protein-D3R, RNA polymerase subunit-A5R, Virion core protein-A10L, EEV glycoprotein-A33R, VARV B22R homologue, and Kelch like protein-A55R that cover the start, middle, and end of the genome were selected. These genes were amplified from Roumanian-Fanar vaccine strain and Jaipur virulent strain, cloned, and sequenced. On analysis with the available database sequences, VARV B22R homologue was identified as a marker for phylogenetic reconstruction for classifying the sheeppox viruses of the ungulates. Further, divergence time dating with VARV B22R gene accurately predicted the sheeppox disease outbreak involving Jaipur virulent strain.
    Isolation and genetic characterization of swinepox virus from pigs in India.
    Riyesh T, Barua S, Kumar N, Jindal N, Bera BC, Narang G, Mahajan NK, Arora D, Anand T, Vaid RK, Yadav M, Chandel SS, Malik P, Tripathi BN, Singh RK. Comp Immunol Microbiol Infect Dis. 2016 Jun;46:60-5. doi: 10.1016/j.cimid.2016.04.001. Epub 2016 Apr 4. PMID: 27260812 Keywords: Ankyrin- repeat protein; Extracellular enveloped protein; Host-range genes; Kelch-like protein; Swinepox virus.
    Klhl31 attenuates β-catenin dependent Wnt signaling and regulates embryo myogenesis.
    Abou-Elhamd A, Alrefaei AF, Mok GF, Garcia-Morales C, Abu-Elmagd M, Wheeler GN, Münsterberg AE. Dev Biol. 2015 Jun 1;402(1):61-71. doi: 10.1016/j.ydbio.2015.02.024. Epub 2015 Mar 19. PMID: 25796573 Free article.
    Klhl31 is a member of the Kelch-like family in vertebrates, which are characterized by an amino-terminal broad complex tram-track, bric-a-brac/poxvirus and zinc finger (BTB/POZ) domain, carboxy-terminal Kelch repeats and a central linker region (Back domain). … Klhl31 interferes with β-catenin dependent Wnt signaling. Klhl31 reduced the Wnt-mediated activation of a luciferase reporter in cultured cells. Furthermore, Klhl31 attenuated secondary axis formation in Xenopus embryos in response to Wnt1 or β-catenin. Klhl31 mis-expression in the developing neural tube affected its dorso-ventral patterning and led to reduced dermomyotome and myotome size. Co-transfection of a Wnt3a expression vector with Klhl31 in somites or in the neural tube rescued the phenotype and restored the size of dermomyotome and myotome. Thus, Klhl31 is a novel modulator of canonical Wnt signaling, important for vertebrate myogenesis. We propose that Klhl31 acts in the myotome to support cell cycle withdrawal and differentiation.

    POXvirusproteiineissa on paljon ankyriini(ANK) toistojaksoja omaavia proteiineja, joilla on virulenssille merkitystä

     https://www.pnas.org/doi/full/10.1073/pnas.0802042105

    ANK proteins constitute the largest family of poxviral proteins but their function and the significance of their abundance have remained an enigma. We propose that poxviruses use these unique ANK/F-box proteins to dictate target specificity to SCF1 ubiquitin ligases and thereby exploit the cell's ubiquitin-proteasome machinery. 

    MPXV

    doi: 10.1128/spectrum.03199-22. Online ahead of print. Unique Tandem Repeats in the Inverted Terminal Repeat Regions of Monkeypox Viruses
    Affiliations
    Abstract

    The genetic diversity, especially in noncoding regions between clade I, clade IIa, and clade IIb monkeypox viruses (MPXVs), is still not fully understood. Here, we report that unique 16-nucleotide-length tandem repeats in MPXVs viruses are located in the noncoding regions of inverted terminal repeats (ITR), and the copy number of this repeat is different among clade I, clade IIa, and clade IIb viruses. It is noteworthy that tandem repeats containing these specific sequences (AACTAACTTATGACTT) are only present in MPXVs and are not found in other poxviruses. Also, the tandem repeats containing these specific sequences (AACTAACTTATGACTT) do not correspond to the tandem repeats present in the human and rodent (mice and rat) genomes. On the other hand, some of the reported tandem repeats in the human and rodent (mice and rat) genomes are present in the clade IIb-B.1 lineage of MPXV. In addition, it is noteworthy that the genes flanking these tandem repeats are lost and gained compared between clade I, clade IIa, and clade IIb MPXV. IMPORTANCE The different groups of MPXVs contain unique tandem repeats with different copy numbers in the ITR regions, and these repeats may be likely to play a role in the genetic diversity of the virus. Clade IIb (B) MPXV contains 38 and 32 repeats similar to the Tandem repeats reported in the human and rodent genome, respectively. However, none of these 38 (human) and 32 (rodent) tandem repeats matched the tandem repeats (AACTAACTTATGACTT) found in the present study. Finally, when developing attenuated or modified MPXV vaccine strains, these repeats in noncoding genomic regions can be exploited to incorporate foreign proteins (adjuvants/other virus proteins/racking fluorescent proteins such as green fluorescent protein) to carry out studies such as vaccine production and virus pathogenesis.

    Keywords: adaptive evolution; horizontal gene transfer; monkeypox; multicountry outbreak 2022; tandem repeats; transposon.

    PubMed Disclaimer


    söndag 12 oktober 2025

    KEAP1-NRF2 ja HIF1a. PubMed haku, 4 vastausta

     

    NRF2 and Hypoxia-Inducible Factors: Key Players in the Redox Control of Systemic Iron Homeostasis.
    Duarte TL, Talbot NP, Drakesmith H. Antioxid Redox Signal. 2021 Aug 20;35(6):433-452. doi: 10.1089/ars.2020.8148. Epub 2020 Nov 10. PMID: 32791852 Review.
    This review analyzes the roles of key oxygen-sensing pathways in cellular and systemic regulation of iron homeostasis; specifically, the prolyl hydroxylase domain (PHD)/hypoxia-inducible factor (HIF) and the Kelch-like ECH-associated protein 1/NF-E2 p45-related factor 2 (KEAP1
    KEAP1-NRF2 complex in ischemia-induced hepatocellular damage of mouse liver transplants.
    Ke B, Shen XD, Zhang Y, Ji H, Gao F, Yue S, Kamo N, Zhai Y, Yamamoto M, Busuttil RW, Kupiec-Weglinski JW. J Hepatol. 2013 Dec;59(6):1200-7. doi: 10.1016/j.jhep.2013.07.016. Epub 2013 Jul 16. PMID: 23867319 Free PMC article.
    BACKGROUND & AIMS: The Keap1-Nrf2 signaling pathway regulates host cell defense responses against oxidative stress and maintains the cellular redox balance. METHODS: We investigated the function/molecular mechanisms by which Keap1-Nrf2 complex may …

    SVA tieto eläinten ihopahkurataudista, lumpy skin disease

     

    ANMÄLNINGSPLIKTIG SJUKDOM EPIZOOTISJUKDOM

    Lumpy skin disease orsakas av ett poxvirus och är närbesläktat med får- och getkoppor. Nötkreatur är det enda tamdjur som kan drabbas.

    Förekomst;  Lumpy skin disease förekommer endemiskt i stora delar av Afrika, och har sedan flera år etablerat sig i Mellanöstern, Turkiet och Ryssland. Under 2015 rapporterades utbrott av Lumpy skin disease från Grekland, vilket var det första fallet av sjukdomen i EU. Året efter (2016) hade sjukdomen spridit sig till omkringliggande länder (Bulgarien, Nordmakedonien, Serbien, Montenegro, Albanien och Kosovo) och det rapporterades över 1 000 utbrott från dessa länder i sydöstra Europa. Sjukdomen bekämpades med hjälp av massvaccinering, och inga utbrott har rapporterats i de drabbade länderna sedan 2018. Under 2025 har utbrott rapporterats från Italien och Frankrike. Sjukdomen har aldrig påvisats i Sverige.
     
    Symtom:Nötkreatur i alla åldrar insjuknar, men unga individer drabbas oftast hårdast. Den kliniska bilden hos nötkreatur varierar, alltifrån dödsfall till enstaka hudutslag utan övriga symtom. I fall med tydliga symtom ses knappformiga, runda hudutslag inom 48 timmar efter en inledande feberstegring. Utslagen kan uppkomma över hela kroppen, alltifrån några enstaka till flera hundra. Djuren blir allmänpåverkade, aptitlösa och får ödem på buk, ben och i dröglapp. Beroende på var utslagen sitter kan till exempel ögon- och nosflöde samt ökad salivering ses. Kopporna kan bli infekterade och bilda bölder. Normalt läker hudförändringarna först efter flera månader och ger bestående ärrbildning. Hudarna blir därför i praktiken värdelösa.
    Smittämne; Sjukdomen orsakas av ett poxvirus (virussläktet 
     
    Inkubationstid: Inkubationstiden är två till fyra veckor.
    Smittvägar: Sjukdomen smittar främst med vektorer såsom flugor, myggor och andra bitande insekter. Direktsmitta mellan djur förekommer också.
    Diagnos: Det snabbaste sättet att bekräfta diagnosen är påvisande av virusgenom i hudlesioner eller inre organ med PCR. Virusisolering och elektronmikroskopering av material från hudlesioner på det drabbade djuret är också säkra metoder för att påvisa virus.  I länder där smittan normalt inte förekommer kan påvisande av antikroppar också användas, men det går inte att skilja på antikroppar mot andra capripoxvirus, det vill säga de virus som orsakar får- och getkoppor. Serologi kan också användas i övervakningssyfte.
    Om man misstänker sjukdomen: Lumpy skin disease lyder under

    I Veterinära författningshandboken kan du läsa mer om den lagstiftning som gäller vid epizootisjukdomar.

    Läs mer hos andra : Europeiska myndigheten för livsmedelssäkerhet (Efsa): Lumpy skin disease

    https://www.woah.org/en/disease/lumpy-skin-disease/ 

     

    Tuhkarokkovirus.

     https://pubmed.ncbi.nlm.nih.gov/41016799/

    Review
    . 2025;75(1):13-22.
    doi: 10.2222/jsv.75.13. [Measles virus]
    [Article in Japanese]
    Affiliations
    Abstract

    Measles virus is the pathogen that causes measles and is highly infectious. Measles virus uses two molecules as viral receptors: signaling lymphocytic activation molecule, expressed on immune cells, and nectin-4, expressed on epithelial cells. Usage of these receptors is strongly associated with the pathogenesis of measles. Although it remains a leading cause of childhood mortality worldwide, measles elimination is being promoted by the availability of a highly effective live attenuated vaccines. Due to the elimination of measles in many countries, the circulating measles genotypes have been reduced to two, B3 and D8, in recent years. Therefore, in addition to genotyping using the conventional 450-nucleotide N gene region, new methods such as wholegenome sequencing and analysis of the M-F non-coding region are being tested for case association and outbreak tracking. Although measles virus is a single serotype, there are genomic differences among genotypes, including variations in B-cell and T-cell epitopes. However, current live attenuated vaccines remain sufficiently effective against all genotypes. On the other hand, the maintenance of protective immunity in vaccinees may become increasingly important, since vaccine-induced immunity tends to wane over time unlike the more durable immunity following natural infection.

     https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=11234

    Measles morbillivirus
    equivalent:
    subacute sclerosing panencephalitis virus, SSPEV
    Subacute sclerosing panencephalitis virus
    Cell-associated subacute sclerosing panencephalitis
    measles virus MV
    rougeole virus
    rubeola virus
    subacute sclerose panencephalitis virus
    Measles virus
    measles

    fredag 10 oktober 2025

    POXVIRUKSET: LSDV ja muita POX-viruksia ...

     

    Genome of Lumpy Skin Disease Virus


    PMCID: PMC114441  PMID: 11435593

    Abstract

    Lumpy skin disease virus (LSDV), a member of the capripoxvirus genus of the Poxviridae, is the etiologic agent of an important disease of cattle in Africa. Here we report the genomic sequence of LSDV. The 151-kbp LSDV genome consists of a central coding region bounded by identical 2.4 kbp-inverted terminal repeats and contains 156 putative genes. Comparison of LSDV with chordopoxviruses of other genera reveals 146 conserved genes which encode proteins involved in transcription and mRNA biogenesis, nucleotide metabolism, DNA replication, protein processing, virion structure and assembly, and viral virulence and host range. In the central genomic region, LSDV genes share a high degree of colinearity and amino acid identity (average of 65%) with genes of other known mammalian poxviruses, particularly suipoxvirus, yatapoxvirus, and leporipoxviruses. In the terminal regions, colinearity is disrupted and poxvirus homologues are either absent or share a lower percentage of amino acid identity (average of 43%). Most of these differences involve genes and gene families with likely functions involving viral virulence and host range. Although LSDV resembles leporipoxviruses in gene content and organization, it also contains homologues of interleukin-10 (IL-10), IL-1 binding proteins, G protein-coupled CC chemokine receptor, and epidermal growth factor-like protein which are found in other poxvirus genera. These data show that although LSDV is closely related to other members of the Chordopoxvirinae, it contains a unique complement of genes responsible for viral host range and virulence.

    Capripoxviruses (CaPVs) represent one of eight genera within the chordopoxvirus (ChPV) subfamily of the Poxviridae.

     The capripoxvirus genus is currently comprised of 
     lumpy skin disease virus (LSDV),  
     sheeppox virus (ShPV), and 
     goatpox virus (GPV)
     
    capra, goat, Bovidae 
    sheep (Ovis), Bovidae
     Goat, capra, Bovidae 

    These viruses are responsible for some of the most economically significant diseases of domestic ruminants in Africa and Asia (). CaPV infections are generally host specific and they have specific geographic distributions (, , ). CaPVs are, however, serologically indistinguishable from each other, able to induce heterologous cross-protection, and able in some instances to experimentally cross-infect (, , , ). Restriction fragment analysis and limited DNA sequence data support a close relationship between CaPVs (, , , ). The molecular basis of CaPV host range restriction and virulence remains to be elucidated.

    LSD is a subacute to acute cattle disease in Africa. It is characterized by extensive cutaneous lesions and signs typical of generalized poxvirus diseases (, ). Transmission of LSD between cattle is inefficient, and arthropod-vectored transmission may be significant in epizootic outbreaks and in the spread of LSD into nonenzootic regions (, , , , ).

     Attenuated LSDV strains and ShPV have been successfully used as LSD vaccines in enzootic and outbreak areas; however, vaccine failure and restrictions on the use of live virus vaccines create the need for a safe and effective, live attenuated vaccine (, , , ).

     Current molecular data on the LSDV genome consists of restriction endonuclease analysis, cross-hybridization studies, and limited transcriptional and DNA sequence analysis (, , , , , ). Given the economic significance of LSD, its potential for spread into nonenzootic regions, and the interest in developing more effective LSDV-based vaccines and expression vectors, we have sequenced and analyzed the genome of a pathogenic LSDV. These data provide the first view of a CaPV genome, and they define the gene complement that underlies LSDV virulence and host range.

    --- 

    LSDV contains 156 ORFs which have been annotated here as putative genes. These genes represent a 95% coding density and encode proteins of 53 to 2,025 amino acids (Fig. 1, Table 1). Similar to other poxviruses, many of the 41 putative early genes are members of gene families and/or putative host range genes, while the 46 genes containing the VV late promoter sequence (TAAATG) at the ATG codon () include many of the conserved virion-associated poxviral genes (Table 1).  

     Otan vain yhden proteiinin rrakenteen, siin on KELCH-proteiinin rakenne selvittettynä, propellit
     

    ecName: Full=Protein C13

    UniProtKB/Swiss-Prot: P32206.1

    Identical Proteins FASTA Graphics 

    LOCUS       VC13_SWPVK               500 aa            linear   VRL 05-FEB-2025
    DEFINITION  RecName: Full=Protein C13.
    ACCESSION   P32206
    VERSION     P32206.1
    DBSOURCE    UniProtKB: locus VC13_SWPVK, accession P32206;
                class: standard.
                created: Oct 1, 1993.
                sequence updated: Oct 1, 1993.
                annotation updated: Feb 5, 2025.
                xrefs: L22013.1, AAC37858.1
                xrefs (non-sequence databases): SMR:P32206, Gene3D:1.25.40.420,
                Gene3D:2.120.10.80, Gene3D:3.30.710.10, InterPro:IPR011705,
                InterPro:IPR000210, InterPro:IPR015915, InterPro:IPR006652,
                InterPro:IPR011333, PANTHER:PTHR24412, PANTHER:PTHR24412:SF489,
                Pfam:PF07707, Pfam:PF00651, Pfam:PF01344, SMART:SM00875,
                SMART:SM00225, SMART:SM00612, SUPFAM:SSF117281, SUPFAM:SSF54695,
                PROSITE:PS50097
    KEYWORDS    Kelch repeat; Repeat.
    SOURCE      Swinepox virus (STRAIN KASZA)
      ORGANISM  Swinepox virus (STRAIN KASZA)
                Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota;
                Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae;
                Suipoxvirus; Suipoxvirus swinepox.
    REFERENCE   1  (residues 1 to 500)
      AUTHORS   Massung,R.F., Jayarama,V. and Moyer,R.W.
      TITLE     DNA sequence analysis of conserved and unique regions of swinepox
                virus: identification of genetic elements supporting phenotypic
                observations including a novel G protein-coupled receptor homologue
      JOURNAL   Virology 197 (2), 511-528 (1993)
       PUBMED   8249275
      REMARK    NUCLEOTIDE SEQUENCE.
    COMMENT     [SIMILARITY] Belongs to the poxviruses Kelch family. {ECO:0000305}.
    FEATURES             Location/Qualifiers
         source          1..500
                         /organism="Swinepox virus (STRAIN KASZA)"
                         /host="Sus scrofa (Pig)"
                         /db_xref="taxon:10277"
         gene            1..500
                         /locus_tag="C13L"
         Protein         1..500
                         /product="Protein C13"
                         /UniProtKB_evidence="Inferred from homology"
         Region          1..500
                         /region_name="Mature chain"
                         /note="Protein C13. /id=PRO_0000119169."
         Region          17..500
                         /region_name="PHA03098"
                         /note="kelch-like protein; Provisional"
                         /db_xref="CDD:222983"
         Region          27..89
                         /region_name="Domain"
                         /note="BTB.
                         /evidence=ECO:0000255|PROSITE-ProRule:PRU00037."
         Region          301..348
                         /region_name="Repetitive region"
                         /note="Kelch 1."
         Region          338..381
                         /region_name="KELCH repeat"
                         /note="KELCH repeat [structural motif]"
                         /db_xref="CDD:276965"
         Region          349..395
                         /region_name="Repetitive region"
                         /note="Kelch 2."
         Region          385..427
                         /region_name="KELCH repeat"
                         /note="KELCH repeat [structural motif]"
                         /db_xref="CDD:276965"
         Region          397..440
                         /region_name="Repetitive region"
                         /note="Kelch 3."
         Region          430..477
                         /region_name="KELCH repeat"
                         /note="KELCH repeat [structural motif]"
                         /db_xref="CDD:276965"
         Region          441..490
                         /region_name="Repetitive region"
                         /note="Kelch 4."
    ORIGIN      
            1 mskqetyidy nyierlnavn lnrsydeeiv fimtvggvvk vkkellvsvs nyfklitknq
           61 sneitvsfqy esfldiikyi etgivtidld nvenifsisc skaidflkns cidfmskhit
          121 dstcvkiyki gfsngcfavy ndaiayirkr ftkietdill slslfdlrii lksgeldvss
          181 eddvllfiik wsrhkksnrr ksftlvtevl rynylsiygk ykltkwlarf gknnnvelne
          241 nelprisyqh rftnrrytmv tpssfsinml gnvsvknels iinsiaenhn pycgsvlmnd
          301 ilyliggink sldpvsdits vdtrsfielh tppllhprkc pgvaifknri yvvggigydg
          361 plktveswsp geqqwreevp llqprfnpci igtdndlyvv ggiseddkti eiysyeentw
          421 signamnysh fggciayhhg yiymigglsf idnihvftmv ekynphsnkw tvekslpfpr
          481 fnsslciied siaiigwiyy
    //