Leta i den här bloggen

onsdag 28 december 2022

Sars-Cov-2 rekombinaatioista luetteloa. Rekombinantit XA- XBK


 

https://github.com/cov-lineages/pango-designation/blob/master/lineage_notes.txt

Rekombinantit päivitetty 27.12.2022

Ne ovat juoksevalla numerolla merkattuja.Juokseva numero ei näy tässä kopiossa kuten netissä. Kirjoitan tähän numerot, koska lista alkaa  Wuhanin A.sta ja rekombinantit tulevat vasta X-kirjaimen kohdalta esiin.

Rekombinanttisarja XA-XZ on välillä 2261-2283.

Rekombinanttisarja XAA-XAZ on välillä 2284-2309.

Rekombinanttisarja XBA-XBK, (joka viimeksimainittu on viimeisin käytetty koodinimi) on välillä2310-2340. Oin tiedot omalle tietokoneelle eilen ja nyt on jo kulunut yksi vuorokausi, mutta asetan eiliset päivitykset tähän.


Sitaatti  GITHUBin Sars-Cov-2 varianttien   rekombinanttien päivityslistasta. Omikronin rekombinantit tulevat kuvioihin vasta  XD:stä alkaen.



XA Recombinant lineage with parental lineages B.1.1.7 and B.1.177, UK lineage

XB Recombinant lineage with parental lineages B.1.634 and B.1.631, Central and North America lineage, discussed in pango-designation issue #189. Formally B.1.628

XC Recombinant lineage with parental lineages AY.29 and B.1.1.7, Japan lineage, from pango-designation issue #263

XD Recombinant lineage of Delta and BA.1, France and Denmark lineage, from pango-designation issue #444

XE Recombinant lineage of BA.1 and BA.2, UK lineage, from pango-designation issue #454

XF Recombinant lineage of Delta and BA.1, UK lineage, from pango-designation issue #445

XG Recombinant lineage of BA.1 and BA.2, Denmark lineage, from pango-designation issue #447

XH Recombinant lineage of BA.1 and BA.2, Denmark lineage, from pango-designation issue #448

XJ Recombinant lineage of BA.1 and BA.2, Finland lineage, from pango-designation issue #449

XK Recombinant lineage of BA.1 and BA.2, Belgium lineage, from pango-designation issue #460

XL Recombinant lineage of BA.1 and BA.2, UK lineage, from pango-designation issue #464

XM Recombinant lineage of BA.1.1 and BA.2, European lineage, from pango-designation issue #472

XN Recombinant lineage of BA.1 and BA.2, UK lineage, from pango-designation issue #480

XP Recombinant lineage of BA.1.1 and BA.2, UK lineage, from pango-designation issue #481

XQ Recombinant lineage of BA.1.1 and BA.2, UK lineage, from pango-designation issue #468

XR Recombinant lineage of BA.1.1 and BA.2, UK lineage, from pango-designation issue #469

XS Recombinant lineage of Delta and BA.1.1, USA lineage, from pango-designation issue #471

XT Recombinant lineage of BA.1 and BA.2, South Africa lineage, from pango-designation issue #478

XU Recombinant lineage of BA.1 and BA.2, lineage in India and other countries, from pango-designation issue #522

XV Recombinant lineage of BA.1 and BA.2, lineage in Denmark and Italy, from pango-designation issue #463

XW Recombinant lineage of BA.1 and BA.2, USA, Germany, England lineage, from pango-designation issue #591

XY Recombinant lineage of BA.1 and BA.2, predominantly in USA, from pango-designation issue #606

XZ Recombinant lineage of BA.2 and BA.1, USA lineage, from pango-designation issue #636

XAA Recombinant lineage of BA.1 and BA.2, USA lineage, from pango-designation issue #664

XAB Recombinant lineage of BA.1 and BA.2, Germany lineage, from pango-designation issue #665

XAC Recombinant lineage of BA.1 and BA.2, Canada and USA lineage, from pango-designation issue #590

XAD Recombinant lineage of BA.2 and BA.1, Germany lineage, from pango-designation issue #607

XAE Recombinant lineage of BA.2 and BA.1, USA and Chile lineage, from pango-designation issue #637

XAF Recombinant lineage of BA.1 and BA.2, Costa Rica lineage, from pango-designation issue #676

XAG Recombinant lineage of BA.1 and BA.2, lineage in Brazil and other countries, from pango-designation issue #709

XAH Recombinant lineage of BA.2 and BA.1, lineage in Slovenia and other countries, from pango-designation issue #755

XAJ Recombinant lineage of BA.2.12.1 and BA.4, predominantly in England, from pango-designation issue #826

XAK Recombinant lineage of BA.1 and BA.2, Germany lineage, from pango-designation issue #823

XAL Recombinant lineage of BA.1 and BA.2, Germany lineage, from pango-designation issue #757

XAM Recombinant lineage of BA.1.1 and BA.2.9, lineage mainly found in Panama and USA, from pango-designation issue #759

XAN Recombinant lineage of BA.2 and BA.5.1, lineage found most often in Spain and Denmark, from pango-designation issue #771

XAP Recombinant lineage of BA.2* and BA.1*, USA lineage, from pango-designation issue #789

XAQ Recombinant lineage of BA.1* and BA.2*, lineage mainly found in Canada, from pango-designation issue #798

XAR Recombinant lineage of BA.1* and BA.2*, Reunion lineage, from pango-designation issue #860

XAS Recombinant lineage of BA.5* and BA.2*, USA lineage, from pango-designation issue #882

XAT Recombinant lineage of BA.2.3.13 and BA.1*, Japan lineage, from pango-designation issue #885

XAU Recombinant lineage of BA.1.1* and BA.2.9*, predominantly in Spain, England and France, from pango-designation issue #894

XAV Recombinant lineage of BA.2* and BA.5*, mainly France, USA, and Scotland lineage, from pango-designation issue #911

XAW Recombinant lineage of BA.2* and AY.122, Russia lineage, from pango-designation issue #895

XAY Recombinant lineage of BA.2 and AY.45, South Africa lineage, from pango-designation issue #844

XAY.1 South Africa/US lineage with 4 AA substitutions including S:D253G

XAY.1.1 South Africa with S:R346T and ORF1a:K2108N, from issue #1255

XAY.2 South Africa/Denmark/Israel lineage with ORF1a:Y3765C

XAZ Recombinant lineage of BA.2.5, BA.5. and BA.2.5, predominantly found in France, Germany, Croatia, Denmark and USA, from pango-designation issue #797

XBA Recombinant lineage of perhaps AY.45 and perhaps BA.2 (with perhaps 5 breakpoints), South_Africa lineage, constellation 2 from pango-designation issue #844

XBB Recombinant lineage of BJ.1 and BA.2.75 with breakpoint in S1, found in USA and Singapore, from issue #1058

XBB.1 Mostly Bangladesh and Singapore, defined by S:G252V, from issue #1088

XBB.1.1 Singapore/Denmark, defined by ORF1a:P309L

XBB.1.2 Singapore, defined by S:S640F

XBB.1.3 Singapore, India/Italy, defined by S:A484T

XBB.1.4 Europe, S:T883I

XBB.1.4.1 Mainly Denmark, Norway and Sweden, defined by S:S673G, from pango-designation issue #1352

XBB.1.5 USA, S:F486P

XBB.1.6 USA, S:L216F, S:H146K, from issue #1428

XBB.1.7 USA-NY, S:V608I

XBB.2 Defined by S:D253G, from issue #1173

XBB.2.1 Defined by S:N764S

XBB.2.2 Defined by S:Q613H

XBB.3 Defined by ORF1b:I1988V on ORF1a:D82G branch

XBB.3.1 Defined by S:Q677R, India-TN/Singapore, from issue #1241

XBB.3.2 Defined by S:M177T

XBB.3.3 Defined by S:V1122L, USA

XBB.4 Defined by S:K444R on ORF1a:D82G branch, from issue #1239

XBB.4.1 England/Austria, S:L5F, S:T470N

XBB.5 Defined by S:A653V on ORF1a:D82G branch, India-TN, Singapore, Australia

XBC Recombinant lineage of BA.2 and B.1.617.2*, predominantly in Philippines, from pango-designation issue #1100

XBC.1 Mostly Philippines, South Korea, US, Singapore, defined by S:L452M, from issue #1130

XBC.2 Mostly Philippines, defined by S:K97R

XBD Recombinant lineage of BA.2.75.2 and BF.5, India and world, from pango-designation issue #1137

XBE Recombinant lineage of BA.5.2 and BE.4.1, predominantly in USA and England, from pango-designation issue #1246

XBF Recombinant lineage of BA.5.2.3 and CJ.1, Australia, from pango-designation issue #1259

XBG Recombinant lineage of BA.2.76 and BA.5.2, predominantly in UK, from pango-designation issue #896

XBH Recombinant lineage of BA.2.3.17 and BA.2.75.2, predominantly in Brunei, from pango-designation issue #1229

XBJ Recombinant lineage of BA.2.3.20 and BA.5.2, possibly Philippines, from pango-designation issue #1268

XBK Recombinant lineage of BA.5.2 and CJ.1, Denmark/Europe, from pango-designation issue #1418


Inga kommentarer:

Skicka en kommentar