Sars-cov-2 variantteja 2024 alkuvuonna

 

pango designation v1.25

Latest

AngieHinrichs released this 08 Feb 18:03

· 6 commits to master since this release

v1.25

7919d72

Release notes

5b7b299 - Angie Hinrichs, 2024-01-18 11:04:12 -0800 : Remove 2339 names that map to multiple sequences in the UCSC UShER tree that are on different lineage branches.
f743d97 - Cornelius Roemer, 2024-01-21 22:18:51 +0100 : Designate JN.11 (S:V1104L, Asia, from sars-cov-2-variants/lineage-proposals#1303)
54f733f - Cornelius Roemer, 2024-01-21 23:58:44 +0100 : Designate JN.1.12 (S:F456V, ORF7a:A8T)
80a788e - Cornelius Roemer, 2024-01-22 00:04:13 +0100 : Designate JN.12 (S:F456V, ORF1a:A498G)
a6e6ad3 - Cornelius Roemer, 2024-01-22 00:42:37 +0100 : Designate JN.1.11.1 (S:F456L, India)
acc65d1 - Angie Hinrichs, 2024-01-22 17:22:03 -0800 : Merge pull request #2466 from AngieHinrichs/removeDupNames
cb7e158 - Cornelius Roemer, 2024-01-31 16:43:00 +0100 : Designate KM.1 (XBB.1.5.4.1, S:K478R, S:M177I, S:N185D, N:A155V, ORF1a:T3696A, Guinea/Senegal)
68ca039 - Cornelius Roemer, 2024-02-01 16:21:06 +0100 : Designate BA.2.87 (C18744T, no C9866T) and BA.2.87.1 (saltation with 15+ spike AA mutations, South Africa, from #2484)
ce9f9d0 - Cornelius Roemer, 2024-02-01 23:17:49 +0100 : Designate XDQ (ecombinant lineage of BA.2.86.1 and FL.15.1.1 (breakpoint between 223605 and 24377), from #2481
f39ed9e - Cornelius Roemer, 2024-02-01 23:23:34 +0100 : Designate GK.1.10.1 (S:A475V, C29668T, Brazil, from #2479)
3292a20 - Cornelius Roemer, 2024-02-01 23:30:25 +0100 : Designate XDR (Recombinant lineage of JD.1.1.1 and JN.1.1 (breakpoint between 11043 and 11726), Brazil, from #2477)
d68c064 - Cornelius Roemer, 2024-02-01 23:47:03 +0100 : Designate JN.1.13 (S:A1087S, USA) and JN.1.14 (S:R346S, USA)
1406788 - Cornelius Roemer, 2024-02-01 23:49:29 +0100 : Designate JN.1.15 (S:A688V)
c843c38 - Cornelius Roemer, 2024-02-01 23:51:10 +0100 : Designate JN.1.4.1 (S:E654V, Ireland)
7058743 - Cornelius Roemer, 2024-02-01 23:53:03 +0100 : Designate JN.1.2.1 (S:H1101Y, Ireland)
d2eec4d - Cornelius Roemer, 2024-02-01 23:55:25 +0100 : Designate JN.1.16 (S:F456L)
5438c32 - Cornelius Roemer, 2024-02-01 23:58:09 +0100 : Designate JN.1.17 (S:A222V, USA)
271f9e0 - Cornelius Roemer, 2024-02-02 16:35:10 +0100 : Designate JN.1.4.2 (S:N185D, USA, from #2462)
253610a - Cornelius Roemer, 2024-02-02 18:47:23 +0100 : Correct designations for BA.2.87 after discussion with @AngieHinrichs
425fe95 - Cornelius Roemer, 2024-02-04 14:55:23 +0100 : Designate JN.1.18 (S:R346T, directly on JN.1 polytomy)
0b504b4 - Cornelius Roemer, 2024-02-04 15:07:19 +0100 : Designate JN.1.19 (ORF8:I71V)
93188fd - Cornelius Roemer, 2024-02-04 15:14:41 +0100 : Designate JN.1.20 (S:S31F, directly on JN.1 polytomy)
ead98f6 - Cornelius Roemer, 2024-02-04 15:57:03 +0100 : Designate XDS (recombinant of EG.5.1.3, JN.3.2.1, EG.5.1.3 (breakpoints at 8294-8392 and 26834-27506)
cd1621e - Cornelius Roemer, 2024-02-04 16:04:11 +0100 : Designate JN.1.9.1 (S:T572I, ORF1a:A3143V)
761aec8 - Cornelius Roemer, 2024-02-04 16:06:16 +0100 : Designate JN.1.21 (S:H1058Y)
a90c8e3 - Cornelius Roemer, 2024-02-04 16:08:17 +0100 : Designate JN.1.22 (ORF1a:S505F, C13019T)
4a389ef - Angie Hinrichs, 2024-02-05 16:08:36 -0800 : Removing Slovakia/RNA/ names because they have many matches.