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måndag 9 mars 2020

COVID-19, nsp6 (3570 .. 3859) 290 aminohappoa, transmembraaninen domeeni

  mat_peptide     3570..3859
                     /product="nsp6"
                     /note="putative transmembrane domain;
 produced by both  pp1a and pp1ab" Protein         <1 ..="">290
                     /product="orf1ab polyprotein"
     mat_peptide     1..290
                     /product="nsp6"
                     /note="putative transmembrane domain; produced by both
                     pp1a and pp1ab"
     CDS             1..4405
                     /gene="orf1a"
                     /coded_by="MT049951.1:266..13483"
                     /note="pp1a"
ORIGIN      
        1 savkrtikgt hhwllltilt sllvlvqstq wslffffyen aflpfamgii amsafammfv
       61 khkhaflclf llpslatvay fnmvympasw vmrimtwldm vdtslsgfkl kdcvmyasav
      121 vllilmtart vyddgarrvw tlmnvltlvy kvyygnaldq aismwaliis vtsnysgvvt
      181 tvmflargiv fmcveycpif fitgntlqci mlvycflgyf ctcyfglfcl lnryfrltlg
      241 vydylvstqe frymnsqgll ppknsidafk lnikllgvgg kpcikvatvq
//
 
 
VERTAILUA VARTEN: AINEN JA SUOMALAINEN SEKVENSSI NSP6 PP1A:STA.sAMAT.
 
3570     s avkrtikgth hwllltilts llvlvqstqw
     3601 slffffyena flpfamgiia msafammfvk hkhaflclfl lpslatvayf nmvympaswv
     3661 mrimtwldmv dtslsgfklk dcvmyasavv llilmtartv yddgarrvwt lmnvltlvyk
     3721 vyygnaldqa ismwaliisv tsnysgvvtt vmflargivf mcveycpiff itgntlqcim
     3781 lvycflgyfc tcyfglfcll nryfrltlgv ydylvstqef rymnsqgllp pknsidafkl
     3841 nikllgvggk pcikvatvq
 
 70      s avkrtikgth hwllltilts llvlvqstqw
     3601 slffflyena flpfamgiia msafammfvk hkhaflclfl lpslatvayf nmvympaswv
     3661 mrimtwldmv dtslsgfklk dcvmyasavv llilmtartv yddgarrvwt lmnvltlvyk
     3721 vyygnaldqa ismwaliisv tsnysgvvtt vmflargivf mcveycpiff itgntlqcim
     3781 lvycflgyfc tcyfglfcll nryfrltlgv ydylvstqef rymnsqgllp pknsidafkl
     3841 nikllgvggk pcikvatvq

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